Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.74■□□□□ 0.75
LIG3P49916 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIG3P49916 KRT16P5-201ENST00000455284 522 ntBASIC19.74■□□□□ 0.75
LIG3P49916 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.74■□□□□ 0.75
LIG3P49916 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
LIG3P49916 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC19.74■□□□□ 0.75
LIG3P49916 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.74■□□□□ 0.75
LIG3P49916 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19.74■□□□□ 0.75
LIG3P49916 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIG3P49916 AC004264.1-201ENST00000608354 794 ntBASIC19.74■□□□□ 0.75
LIG3P49916 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LIG3P49916 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIG3P49916 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
LIG3P49916 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LIG3P49916 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIG3P49916 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
LIG3P49916 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC19.74■□□□□ 0.75
LIG3P49916 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIG3P49916 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG3P49916 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIG3P49916 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG3P49916 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
LIG3P49916 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.73■□□□□ 0.75
LIG3P49916 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
LIG3P49916 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG3P49916 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
LIG3P49916 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
LIG3P49916 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG3P49916 AP006587.1-201ENST00000534129 1502 ntBASIC19.73■□□□□ 0.75
LIG3P49916 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIG3P49916 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.73■□□□□ 0.75
LIG3P49916 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG3P49916 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG3P49916 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG3P49916 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIG3P49916 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG3P49916 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.73■□□□□ 0.75
LIG3P49916 RPS2P55-201ENST00000397318 883 ntBASIC19.73■□□□□ 0.75
LIG3P49916 AL596275.1-201ENST00000423464 877 ntBASIC19.73■□□□□ 0.75
LIG3P49916 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
LIG3P49916 AC107956.1-201ENST00000494359 873 ntBASIC19.73■□□□□ 0.75
LIG3P49916 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
LIG3P49916 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIG3P49916 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG3P49916 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG3P49916 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG3P49916 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG3P49916 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG3P49916 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG3P49916 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.73■□□□□ 0.75
LIG3P49916 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIG3P49916 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.73■□□□□ 0.75
LIG3P49916 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.73■□□□□ 0.75
LIG3P49916 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG3P49916 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG3P49916 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIG3P49916 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC19.72■□□□□ 0.75
LIG3P49916 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG3P49916 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG3P49916 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIG3P49916 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG3P49916 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
LIG3P49916 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIG3P49916 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC19.72■□□□□ 0.75
LIG3P49916 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIG3P49916 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG3P49916 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG3P49916 RARRES2P10-201ENST00000564312 460 ntBASIC19.72■□□□□ 0.75
LIG3P49916 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
LIG3P49916 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
LIG3P49916 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG3P49916 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIG3P49916 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG3P49916 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG3P49916 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.72■□□□□ 0.75
LIG3P49916 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG3P49916 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.72■□□□□ 0.75
LIG3P49916 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG3P49916 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.72■□□□□ 0.75
LIG3P49916 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIG3P49916 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIG3P49916 TNRC18P3-201ENST00000441896 2691 ntBASIC19.71■□□□□ 0.75
LIG3P49916 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.71■□□□□ 0.75
LIG3P49916 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIG3P49916 AL135905.2-201ENST00000584934 1404 ntBASIC19.71■□□□□ 0.75
LIG3P49916 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIG3P49916 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
LIG3P49916 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIG3P49916 AC012618.2-201ENST00000428058 849 ntBASIC19.71■□□□□ 0.75
LIG3P49916 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIG3P49916 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.71■□□□□ 0.75
LIG3P49916 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.71■□□□□ 0.75
LIG3P49916 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
LIG3P49916 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.71■□□□□ 0.75
LIG3P49916 AC233702.5-201ENST00000584107 538 ntBASIC19.71■□□□□ 0.75
LIG3P49916 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.71■□□□□ 0.75
LIG3P49916 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.71■□□□□ 0.75
LIG3P49916 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.71■□□□□ 0.75
LIG3P49916 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIG3P49916 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms