Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN4P29074 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN4P29074 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN4P29074 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC18.9■□□□□ 0.62
PTPN4P29074 RARRES2P10-201ENST00000564312 460 ntBASIC18.9■□□□□ 0.62
PTPN4P29074 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.9■□□□□ 0.62
PTPN4P29074 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.9■□□□□ 0.62
PTPN4P29074 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.9■□□□□ 0.62
PTPN4P29074 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN4P29074 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN4P29074 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN4P29074 KRT8P17-201ENST00000453110 1448 ntBASIC18.9■□□□□ 0.62
PTPN4P29074 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN4P29074 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN4P29074 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PTPN4P29074 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
PTPN4P29074 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.89■□□□□ 0.62
PTPN4P29074 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
PTPN4P29074 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.89■□□□□ 0.61
PTPN4P29074 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.89■□□□□ 0.61
PTPN4P29074 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTPN4P29074 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
PTPN4P29074 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.89■□□□□ 0.61
PTPN4P29074 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.89■□□□□ 0.61
PTPN4P29074 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.89■□□□□ 0.61
PTPN4P29074 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTPN4P29074 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.89■□□□□ 0.61
PTPN4P29074 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.89■□□□□ 0.61
PTPN4P29074 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC18.89■□□□□ 0.61
PTPN4P29074 AL121829.2-201ENST00000620908 328 ntBASIC18.89■□□□□ 0.61
PTPN4P29074 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTPN4P29074 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PTPN4P29074 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PTPN4P29074 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTPN4P29074 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
PTPN4P29074 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.89■□□□□ 0.61
PTPN4P29074 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.89■□□□□ 0.61
PTPN4P29074 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
PTPN4P29074 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.88■□□□□ 0.61
PTPN4P29074 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN4P29074 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
PTPN4P29074 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN4P29074 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.88■□□□□ 0.61
PTPN4P29074 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN4P29074 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.88■□□□□ 0.61
PTPN4P29074 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.88■□□□□ 0.61
PTPN4P29074 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN4P29074 AC067852.2-201ENST00000590513 2313 ntBASIC18.88■□□□□ 0.61
PTPN4P29074 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
PTPN4P29074 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN4P29074 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
PTPN4P29074 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN4P29074 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.88■□□□□ 0.61
PTPN4P29074 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN4P29074 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.88■□□□□ 0.61
PTPN4P29074 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.88■□□□□ 0.61
PTPN4P29074 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN4P29074 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.88■□□□□ 0.61
PTPN4P29074 MIR4785-201ENST00000585005 73 ntBASIC18.88■□□□□ 0.61
PTPN4P29074 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
PTPN4P29074 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
PTPN4P29074 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
PTPN4P29074 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
PTPN4P29074 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
PTPN4P29074 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.88■□□□□ 0.61
PTPN4P29074 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.88■□□□□ 0.61
PTPN4P29074 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.88■□□□□ 0.61
PTPN4P29074 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
PTPN4P29074 PTBP1P-201ENST00000554374 1601 ntBASIC18.88■□□□□ 0.61
PTPN4P29074 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
PTPN4P29074 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN4P29074 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
PTPN4P29074 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN4P29074 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.88■□□□□ 0.61
PTPN4P29074 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.88■□□□□ 0.61
PTPN4P29074 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
PTPN4P29074 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
PTPN4P29074 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTPN4P29074 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTPN4P29074 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTPN4P29074 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.87■□□□□ 0.61
PTPN4P29074 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PTPN4P29074 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
PTPN4P29074 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
PTPN4P29074 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PTPN4P29074 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTPN4P29074 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTPN4P29074 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.87■□□□□ 0.61
PTPN4P29074 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.87■□□□□ 0.61
PTPN4P29074 AC211429.1-201ENST00000415277 523 ntBASIC18.87■□□□□ 0.61
PTPN4P29074 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.87■□□□□ 0.61
PTPN4P29074 ECEL1P3-201ENST00000427961 737 ntBASIC18.87■□□□□ 0.61
PTPN4P29074 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC18.87■□□□□ 0.61
PTPN4P29074 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.87■□□□□ 0.61
PTPN4P29074 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.87■□□□□ 0.61
PTPN4P29074 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.87■□□□□ 0.61
PTPN4P29074 BX088651.1-201ENST00000540551 451 ntBASIC18.87■□□□□ 0.61
PTPN4P29074 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.87■□□□□ 0.61
PTPN4P29074 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTPN4P29074 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms