Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
HMGB1P09429 WIZP1-201ENST00000531444 2299 ntBASIC22.22■■□□□ 1.15
HMGB1P09429 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
HMGB1P09429 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC22.21■■□□□ 1.15
HMGB1P09429 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGB1P09429 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGB1P09429 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
HMGB1P09429 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGB1P09429 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
HMGB1P09429 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGB1P09429 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC22.21■■□□□ 1.15
HMGB1P09429 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC22.21■■□□□ 1.15
HMGB1P09429 RBM17P1-201ENST00000453646 1190 ntBASIC22.21■■□□□ 1.15
HMGB1P09429 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC22.21■■□□□ 1.15
HMGB1P09429 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC22.21■■□□□ 1.15
HMGB1P09429 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC22.21■■□□□ 1.15
HMGB1P09429 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC22.21■■□□□ 1.15
HMGB1P09429 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC22.21■■□□□ 1.15
HMGB1P09429 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
HMGB1P09429 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGB1P09429 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGB1P09429 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC22.21■■□□□ 1.15
HMGB1P09429 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGB1P09429 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGB1P09429 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
HMGB1P09429 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
HMGB1P09429 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
HMGB1P09429 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
HMGB1P09429 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
HMGB1P09429 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
HMGB1P09429 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HMGB1P09429 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC22.2■■□□□ 1.14
HMGB1P09429 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HMGB1P09429 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC22.2■■□□□ 1.14
HMGB1P09429 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HMGB1P09429 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC22.2■■□□□ 1.14
HMGB1P09429 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HMGB1P09429 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC22.2■■□□□ 1.14
HMGB1P09429 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HMGB1P09429 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HMGB1P09429 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC22.2■■□□□ 1.14
HMGB1P09429 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
HMGB1P09429 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC22.2■■□□□ 1.14
HMGB1P09429 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC22.2■■□□□ 1.14
HMGB1P09429 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
HMGB1P09429 TBC1D3P2-202ENST00000577902 1649 ntBASIC22.2■■□□□ 1.14
HMGB1P09429 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC22.2■■□□□ 1.14
HMGB1P09429 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HMGB1P09429 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC22.19■■□□□ 1.14
HMGB1P09429 USP49-202ENST00000373010 2446 ntTSL 5 BASIC22.19■■□□□ 1.14
HMGB1P09429 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
HMGB1P09429 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
HMGB1P09429 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
HMGB1P09429 SNORA78-201ENST00000459373 127 ntBASIC22.19■■□□□ 1.14
HMGB1P09429 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC22.19■■□□□ 1.14
HMGB1P09429 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC22.19■■□□□ 1.14
HMGB1P09429 AC008622.2-201ENST00000617006 1229 ntBASIC22.19■■□□□ 1.14
HMGB1P09429 MYC-208ENST00000641036 567 ntBASIC22.19■■□□□ 1.14
HMGB1P09429 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC22.19■■□□□ 1.14
HMGB1P09429 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
HMGB1P09429 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
HMGB1P09429 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
HMGB1P09429 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
HMGB1P09429 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC22.19■■□□□ 1.14
HMGB1P09429 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC22.19■■□□□ 1.14
HMGB1P09429 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
HMGB1P09429 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
HMGB1P09429 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGB1P09429 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGB1P09429 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC22.18■■□□□ 1.14
HMGB1P09429 AL357033.4-201ENST00000617703 1807 ntBASIC22.18■■□□□ 1.14
HMGB1P09429 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGB1P09429 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC22.18■■□□□ 1.14
HMGB1P09429 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGB1P09429 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGB1P09429 BUB3-202ENST00000368859 667 ntTSL 3 BASIC22.18■■□□□ 1.14
HMGB1P09429 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC22.18■■□□□ 1.14
HMGB1P09429 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC22.18■■□□□ 1.14
HMGB1P09429 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
HMGB1P09429 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGB1P09429 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
HMGB1P09429 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC22.18■■□□□ 1.14
HMGB1P09429 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGB1P09429 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGB1P09429 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
HMGB1P09429 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
HMGB1P09429 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGB1P09429 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGB1P09429 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
HMGB1P09429 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
HMGB1P09429 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC22.17■■□□□ 1.14
HMGB1P09429 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC22.17■■□□□ 1.14
HMGB1P09429 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGB1P09429 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC22.17■■□□□ 1.14
HMGB1P09429 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
HMGB1P09429 SLC25A1P2-201ENST00000430693 912 ntBASIC22.17■■□□□ 1.14
HMGB1P09429 FITM1-202ENST00000559294 800 ntBASIC22.17■■□□□ 1.14
HMGB1P09429 MIR4497-201ENST00000583208 89 ntBASIC22.17■■□□□ 1.14
HMGB1P09429 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
HMGB1P09429 SNX21-213ENST00000614929 587 ntTSL 5 BASIC22.17■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms