Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDLRP01130 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LDLRP01130 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.19■□□□□ 0.5
LDLRP01130 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.19■□□□□ 0.5
LDLRP01130 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.19■□□□□ 0.5
LDLRP01130 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDLRP01130 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
LDLRP01130 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LDLRP01130 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.19■□□□□ 0.5
LDLRP01130 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.19■□□□□ 0.5
LDLRP01130 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDLRP01130 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDLRP01130 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LDLRP01130 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDLRP01130 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
LDLRP01130 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
LDLRP01130 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDLRP01130 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDLRP01130 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.18■□□□□ 0.5
LDLRP01130 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDLRP01130 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LDLRP01130 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDLRP01130 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDLRP01130 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDLRP01130 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.18■□□□□ 0.5
LDLRP01130 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LDLRP01130 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDLRP01130 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDLRP01130 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LDLRP01130 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
LDLRP01130 HLA-G-202ENST00000376815 851 ntBASIC18.18■□□□□ 0.5
LDLRP01130 HLA-G-203ENST00000376818 1127 ntBASIC18.18■□□□□ 0.5
LDLRP01130 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.18■□□□□ 0.5
LDLRP01130 AP003071.4-201ENST00000562276 1284 ntBASIC18.18■□□□□ 0.5
LDLRP01130 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.18■□□□□ 0.5
LDLRP01130 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LDLRP01130 AL133373.2-201ENST00000623187 2828 ntBASIC18.18■□□□□ 0.5
LDLRP01130 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LDLRP01130 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LDLRP01130 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDLRP01130 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
LDLRP01130 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
LDLRP01130 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LDLRP01130 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LDLRP01130 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LDLRP01130 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LDLRP01130 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.17■□□□□ 0.5
LDLRP01130 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
LDLRP01130 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
LDLRP01130 Z98044.1-201ENST00000632503 1764 ntBASIC18.17■□□□□ 0.5
LDLRP01130 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LDLRP01130 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
LDLRP01130 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LDLRP01130 PCDHB18P-201ENST00000524813 2368 ntBASIC18.17■□□□□ 0.5
LDLRP01130 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LDLRP01130 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LDLRP01130 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LDLRP01130 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.17■□□□□ 0.5
LDLRP01130 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LDLRP01130 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LDLRP01130 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LDLRP01130 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LDLRP01130 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
LDLRP01130 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
LDLRP01130 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
LDLRP01130 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.17■□□□□ 0.5
LDLRP01130 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LDLRP01130 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
LDLRP01130 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.17■□□□□ 0.5
LDLRP01130 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LDLRP01130 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LDLRP01130 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
LDLRP01130 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
LDLRP01130 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
LDLRP01130 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LDLRP01130 AC093525.10-201ENST00000625130 1569 ntBASIC18.17■□□□□ 0.5
LDLRP01130 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.17■□□□□ 0.5
LDLRP01130 LTB4R2-202ENST00000528054 3092 ntBASIC18.17■□□□□ 0.5
LDLRP01130 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LDLRP01130 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LDLRP01130 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LDLRP01130 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.16■□□□□ 0.5
LDLRP01130 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
LDLRP01130 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LDLRP01130 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.16■□□□□ 0.5
LDLRP01130 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.16■□□□□ 0.5
LDLRP01130 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.16■□□□□ 0.5
LDLRP01130 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LDLRP01130 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LDLRP01130 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.16■□□□□ 0.5
LDLRP01130 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LDLRP01130 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LDLRP01130 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LDLRP01130 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
LDLRP01130 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LDLRP01130 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LDLRP01130 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LDLRP01130 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LDLRP01130 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LDLRP01130 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms