Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SEMA3DO95025 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
SEMA3DO95025 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.04■□□□□ 0.48
SEMA3DO95025 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.04■□□□□ 0.48
SEMA3DO95025 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.04■□□□□ 0.48
SEMA3DO95025 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.04■□□□□ 0.48
SEMA3DO95025 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.04■□□□□ 0.48
SEMA3DO95025 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SEMA3DO95025 TMEM191A-211ENST00000637163 1067 ntBASIC18.04■□□□□ 0.48
SEMA3DO95025 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SEMA3DO95025 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.04■□□□□ 0.48
SEMA3DO95025 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
SEMA3DO95025 AL512353.2-201ENST00000448759 1962 ntBASIC18.04■□□□□ 0.48
SEMA3DO95025 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SEMA3DO95025 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SEMA3DO95025 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SEMA3DO95025 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SEMA3DO95025 AC096733.2-201ENST00000609937 1394 ntBASIC18.04■□□□□ 0.48
SEMA3DO95025 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.03■□□□□ 0.48
SEMA3DO95025 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.03■□□□□ 0.48
SEMA3DO95025 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.03■□□□□ 0.48
SEMA3DO95025 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.03■□□□□ 0.48
SEMA3DO95025 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.03■□□□□ 0.48
SEMA3DO95025 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.03■□□□□ 0.48
SEMA3DO95025 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.03■□□□□ 0.48
SEMA3DO95025 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.03■□□□□ 0.48
SEMA3DO95025 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.03■□□□□ 0.48
SEMA3DO95025 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.03■□□□□ 0.48
SEMA3DO95025 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.03■□□□□ 0.48
SEMA3DO95025 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.03■□□□□ 0.48
SEMA3DO95025 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
SEMA3DO95025 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.03■□□□□ 0.48
SEMA3DO95025 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SEMA3DO95025 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.02■□□□□ 0.48
SEMA3DO95025 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
SEMA3DO95025 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SEMA3DO95025 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
SEMA3DO95025 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
SEMA3DO95025 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SEMA3DO95025 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.02■□□□□ 0.48
SEMA3DO95025 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.02■□□□□ 0.48
SEMA3DO95025 MIR718-201ENST00000390190 70 ntBASIC18.02■□□□□ 0.48
SEMA3DO95025 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC18.02■□□□□ 0.48
SEMA3DO95025 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SEMA3DO95025 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SEMA3DO95025 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SEMA3DO95025 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SEMA3DO95025 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
SEMA3DO95025 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SEMA3DO95025 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.47
SEMA3DO95025 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SEMA3DO95025 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.02■□□□□ 0.47
SEMA3DO95025 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.01■□□□□ 0.47
SEMA3DO95025 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.01■□□□□ 0.47
SEMA3DO95025 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SEMA3DO95025 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.01■□□□□ 0.47
SEMA3DO95025 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.01■□□□□ 0.47
SEMA3DO95025 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SEMA3DO95025 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.01■□□□□ 0.47
SEMA3DO95025 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.01■□□□□ 0.47
SEMA3DO95025 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.01■□□□□ 0.47
SEMA3DO95025 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SEMA3DO95025 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SEMA3DO95025 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SEMA3DO95025 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
SEMA3DO95025 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SEMA3DO95025 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SEMA3DO95025 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
SEMA3DO95025 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.01■□□□□ 0.47
SEMA3DO95025 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.01■□□□□ 0.47
SEMA3DO95025 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.01■□□□□ 0.47
SEMA3DO95025 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.01■□□□□ 0.47
SEMA3DO95025 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.01■□□□□ 0.47
SEMA3DO95025 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.01■□□□□ 0.47
SEMA3DO95025 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.01■□□□□ 0.47
SEMA3DO95025 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 66.4 ms