Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC16.56■□□□□ 0.24
LMX1BO60663 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1BO60663 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1BO60663 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1BO60663 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC16.56■□□□□ 0.24
LMX1BO60663 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1BO60663 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1BO60663 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC16.56■□□□□ 0.24
LMX1BO60663 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1BO60663 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1BO60663 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1BO60663 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1BO60663 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1BO60663 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1BO60663 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1BO60663 F2R-202ENST00000505600 442 ntTSL 2 BASIC16.56■□□□□ 0.24
LMX1BO60663 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC16.56■□□□□ 0.24
LMX1BO60663 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC16.56■□□□□ 0.24
LMX1BO60663 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
LMX1BO60663 GRAP-204ENST00000573099 846 ntTSL 3 BASIC16.56■□□□□ 0.24
LMX1BO60663 RN7SL850P-201ENST00000579959 291 ntBASIC16.56■□□□□ 0.24
LMX1BO60663 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
LMX1BO60663 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.56■□□□□ 0.24
LMX1BO60663 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
LMX1BO60663 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC16.56■□□□□ 0.24
LMX1BO60663 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1BO60663 AC018470.1-201ENST00000624790 3129 ntBASIC16.56■□□□□ 0.24
LMX1BO60663 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC16.56■□□□□ 0.24
LMX1BO60663 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.56■□□□□ 0.24
LMX1BO60663 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1BO60663 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LMX1BO60663 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1BO60663 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
LMX1BO60663 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC16.55■□□□□ 0.24
LMX1BO60663 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.55■□□□□ 0.24
LMX1BO60663 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1BO60663 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1BO60663 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1BO60663 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
LMX1BO60663 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
LMX1BO60663 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.55■□□□□ 0.24
LMX1BO60663 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1BO60663 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1BO60663 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1BO60663 ARMC10P1-201ENST00000313754 855 ntBASIC16.55■□□□□ 0.24
LMX1BO60663 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1BO60663 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1BO60663 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1BO60663 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC16.55■□□□□ 0.24
LMX1BO60663 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC16.55■□□□□ 0.24
LMX1BO60663 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC16.55■□□□□ 0.24
LMX1BO60663 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC16.55■□□□□ 0.24
LMX1BO60663 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC16.55■□□□□ 0.24
LMX1BO60663 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC16.55■□□□□ 0.24
LMX1BO60663 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1BO60663 DECR2-212ENST00000627716 352 ntTSL 2 BASIC16.55■□□□□ 0.24
LMX1BO60663 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1BO60663 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC16.55■□□□□ 0.24
LMX1BO60663 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC16.55■□□□□ 0.24
LMX1BO60663 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
LMX1BO60663 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
LMX1BO60663 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1BO60663 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
LMX1BO60663 AC090164.3-201ENST00000610780 2143 ntBASIC16.55■□□□□ 0.24
LMX1BO60663 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1BO60663 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1BO60663 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LMX1BO60663 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1BO60663 NBPF21P-201ENST00000425093 1451 ntBASIC16.54■□□□□ 0.24
LMX1BO60663 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1BO60663 AIRN-201ENST00000601203 4374 ntBASIC16.54■□□□□ 0.24
LMX1BO60663 COMP-202ENST00000425807 2292 ntTSL 2 BASIC16.54■□□□□ 0.24
LMX1BO60663 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1BO60663 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
LMX1BO60663 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
LMX1BO60663 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC16.54■□□□□ 0.24
LMX1BO60663 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1BO60663 FAM197Y1-201ENST00000421178 764 ntBASIC16.54■□□□□ 0.24
LMX1BO60663 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1BO60663 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
LMX1BO60663 NT5C-211ENST00000582170 653 ntTSL 3 BASIC16.54■□□□□ 0.24
LMX1BO60663 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1BO60663 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC16.54■□□□□ 0.24
LMX1BO60663 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.54■□□□□ 0.24
LMX1BO60663 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.54■□□□□ 0.24
LMX1BO60663 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1BO60663 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1BO60663 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1BO60663 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
LMX1BO60663 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
LMX1BO60663 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1BO60663 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1BO60663 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LMX1BO60663 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.54■□□□□ 0.24
LMX1BO60663 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.54■□□□□ 0.24
LMX1BO60663 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1BO60663 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.53■□□□□ 0.24
LMX1BO60663 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
LMX1BO60663 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC16.53■□□□□ 0.24
LMX1BO60663 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms