Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB3O15347 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGB3O15347 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB3O15347 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGB3O15347 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
HMGB3O15347 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGB3O15347 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
HMGB3O15347 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC15.16■□□□□ 0.02
HMGB3O15347 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC15.16■□□□□ 0.02
HMGB3O15347 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB3O15347 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC15.16■□□□□ 0.02
HMGB3O15347 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB3O15347 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC15.16■□□□□ 0.02
HMGB3O15347 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGB3O15347 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC15.16■□□□□ 0.02
HMGB3O15347 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB3O15347 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB3O15347 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGB3O15347 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGB3O15347 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.16■□□□□ 0.02
HMGB3O15347 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB3O15347 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB3O15347 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB3O15347 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB3O15347 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGB3O15347 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGB3O15347 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB3O15347 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
HMGB3O15347 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
HMGB3O15347 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB3O15347 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB3O15347 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB3O15347 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB3O15347 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB3O15347 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB3O15347 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.15■□□□□ 0.02
HMGB3O15347 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB3O15347 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB3O15347 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB3O15347 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
HMGB3O15347 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.15■□□□□ 0.02
HMGB3O15347 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC15.15■□□□□ 0.02
HMGB3O15347 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC15.15■□□□□ 0.02
HMGB3O15347 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB3O15347 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB3O15347 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
HMGB3O15347 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC15.15■□□□□ 0.02
HMGB3O15347 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB3O15347 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB3O15347 CASP6-205ENST00000505486 538 ntTSL 4 BASIC15.15■□□□□ 0.02
HMGB3O15347 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC15.15■□□□□ 0.02
HMGB3O15347 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
HMGB3O15347 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB3O15347 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB3O15347 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC15.15■□□□□ 0.02
HMGB3O15347 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
HMGB3O15347 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB3O15347 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB3O15347 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC15.15■□□□□ 0.02
HMGB3O15347 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB3O15347 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB3O15347 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB3O15347 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB3O15347 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
HMGB3O15347 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB3O15347 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB3O15347 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC15.15■□□□□ 0.02
HMGB3O15347 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB3O15347 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
HMGB3O15347 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGB3O15347 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB3O15347 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB3O15347 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC15.14■□□□□ 0.01
HMGB3O15347 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB3O15347 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB3O15347 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB3O15347 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC15.14■□□□□ 0.01
HMGB3O15347 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB3O15347 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB3O15347 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB3O15347 HLA-G-202ENST00000376815 851 ntBASIC15.14■□□□□ 0.01
HMGB3O15347 HLA-G-203ENST00000376818 1127 ntBASIC15.14■□□□□ 0.01
HMGB3O15347 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC15.14■□□□□ 0.01
HMGB3O15347 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC15.14■□□□□ 0.01
HMGB3O15347 RHOF-204ENST00000537265 699 ntTSL 2 BASIC15.14■□□□□ 0.01
HMGB3O15347 SLC7A5P1-201ENST00000568957 537 ntBASIC15.14■□□□□ 0.01
HMGB3O15347 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB3O15347 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB3O15347 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
HMGB3O15347 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC15.14■□□□□ 0.01
HMGB3O15347 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC15.14■□□□□ 0.01
HMGB3O15347 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB3O15347 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
HMGB3O15347 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
HMGB3O15347 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
HMGB3O15347 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB3O15347 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC15.14■□□□□ 0.01
HMGB3O15347 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HMGB3O15347 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
HMGB3O15347 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms