Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC17.71■□□□□ 0.43
CACNA1AO00555 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CACNA1AO00555 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CACNA1AO00555 ELL2P1-201ENST00000413990 1906 ntBASIC17.71■□□□□ 0.42
CACNA1AO00555 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC17.71■□□□□ 0.42
CACNA1AO00555 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CACNA1AO00555 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CACNA1AO00555 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CACNA1AO00555 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CACNA1AO00555 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CACNA1AO00555 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.7■□□□□ 0.42
CACNA1AO00555 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CACNA1AO00555 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CACNA1AO00555 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CACNA1AO00555 GOLGA6L17P-202ENST00000614358 1398 ntBASIC17.7■□□□□ 0.42
CACNA1AO00555 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CACNA1AO00555 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.7■□□□□ 0.42
CACNA1AO00555 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
CACNA1AO00555 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC17.7■□□□□ 0.42
CACNA1AO00555 MCCD1P1-208ENST00000445732 328 ntBASIC17.7■□□□□ 0.42
CACNA1AO00555 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.7■□□□□ 0.42
CACNA1AO00555 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.7■□□□□ 0.42
CACNA1AO00555 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.7■□□□□ 0.42
CACNA1AO00555 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CACNA1AO00555 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.7■□□□□ 0.42
CACNA1AO00555 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC17.7■□□□□ 0.42
CACNA1AO00555 AL353692.3-201ENST00000407031 1396 ntBASIC17.69■□□□□ 0.42
CACNA1AO00555 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.69■□□□□ 0.42
CACNA1AO00555 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CACNA1AO00555 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CACNA1AO00555 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.69■□□□□ 0.42
CACNA1AO00555 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CACNA1AO00555 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC17.69■□□□□ 0.42
CACNA1AO00555 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CACNA1AO00555 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
CACNA1AO00555 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.69■□□□□ 0.42
CACNA1AO00555 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.69■□□□□ 0.42
CACNA1AO00555 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
CACNA1AO00555 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CACNA1AO00555 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC17.69■□□□□ 0.42
CACNA1AO00555 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC17.69■□□□□ 0.42
CACNA1AO00555 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CACNA1AO00555 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CACNA1AO00555 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CACNA1AO00555 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CACNA1AO00555 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CACNA1AO00555 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CACNA1AO00555 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.68■□□□□ 0.42
CACNA1AO00555 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CACNA1AO00555 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CACNA1AO00555 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.68■□□□□ 0.42
CACNA1AO00555 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
CACNA1AO00555 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.68■□□□□ 0.42
CACNA1AO00555 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.68■□□□□ 0.42
CACNA1AO00555 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
CACNA1AO00555 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CACNA1AO00555 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CACNA1AO00555 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
CACNA1AO00555 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC17.68■□□□□ 0.42
CACNA1AO00555 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.68■□□□□ 0.42
CACNA1AO00555 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC17.68■□□□□ 0.42
CACNA1AO00555 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
CACNA1AO00555 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CACNA1AO00555 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC17.68■□□□□ 0.42
CACNA1AO00555 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.68■□□□□ 0.42
CACNA1AO00555 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CACNA1AO00555 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CACNA1AO00555 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CACNA1AO00555 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CACNA1AO00555 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.68■□□□□ 0.42
CACNA1AO00555 AC079834.2-201ENST00000609776 1949 ntBASIC17.68■□□□□ 0.42
CACNA1AO00555 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CACNA1AO00555 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC17.67■□□□□ 0.42
CACNA1AO00555 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC17.67■□□□□ 0.42
CACNA1AO00555 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.67■□□□□ 0.42
CACNA1AO00555 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.67■□□□□ 0.42
CACNA1AO00555 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.67■□□□□ 0.42
CACNA1AO00555 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC17.67■□□□□ 0.42
CACNA1AO00555 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.67■□□□□ 0.42
CACNA1AO00555 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.67■□□□□ 0.42
CACNA1AO00555 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.67■□□□□ 0.42
CACNA1AO00555 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CACNA1AO00555 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CACNA1AO00555 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.67■□□□□ 0.42
CACNA1AO00555 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CACNA1AO00555 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC17.67■□□□□ 0.42
CACNA1AO00555 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CACNA1AO00555 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CACNA1AO00555 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC17.67■□□□□ 0.42
CACNA1AO00555 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
CACNA1AO00555 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.67■□□□□ 0.42
CACNA1AO00555 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CACNA1AO00555 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CACNA1AO00555 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CACNA1AO00555 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CACNA1AO00555 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CACNA1AO00555 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
CACNA1AO00555 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.67■□□□□ 0.42
CACNA1AO00555 KRT18P2-201ENST00000447938 1258 ntBASIC17.67■□□□□ 0.42
CACNA1AO00555 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms