Protein–RNA interactions for Protein: A0A087WT01

TRAV27, T-cell receptor alpha variable 27 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV27A0A087WT01 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV27A0A087WT01 AL390961.4-201ENST00000623958 2535 ntBASIC17.09■□□□□ 0.33
TRAV27A0A087WT01 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
TRAV27A0A087WT01 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV27A0A087WT01 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRAV27A0A087WT01 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.08■□□□□ 0.33
TRAV27A0A087WT01 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.33
TRAV27A0A087WT01 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.08■□□□□ 0.33
TRAV27A0A087WT01 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
TRAV27A0A087WT01 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRAV27A0A087WT01 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRAV27A0A087WT01 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRAV27A0A087WT01 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRAV27A0A087WT01 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.08■□□□□ 0.33
TRAV27A0A087WT01 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRAV27A0A087WT01 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
TRAV27A0A087WT01 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 AC006058.3-201ENST00000606217 1069 ntBASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 AC110285.5-201ENST00000611501 352 ntBASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 AC073648.6-201ENST00000641589 218 ntBASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
TRAV27A0A087WT01 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 KRT8P11-201ENST00000409686 1436 ntBASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 AC133681.1-201ENST00000465482 601 ntBASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 AC126763.1-201ENST00000552015 2118 ntBASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 RN7SL471P-201ENST00000580476 299 ntBASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 AL445675.2-201ENST00000620291 557 ntBASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV27A0A087WT01 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 ADM-205ENST00000528544 586 ntTSL 2 BASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 RCC2P6-201ENST00000526625 1557 ntBASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV27A0A087WT01 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV27A0A087WT01 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.05■□□□□ 0.32
TRAV27A0A087WT01 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms