Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.1■□□□□ 0.49
PCDHGA1Q9Y5H4 AC090616.6-201ENST00000582640 721 ntBASIC18.1■□□□□ 0.49
PCDHGA1Q9Y5H4 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHGA1Q9Y5H4 AC004263.2-201ENST00000617183 678 ntBASIC18.1■□□□□ 0.49
PCDHGA1Q9Y5H4 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC18.1■□□□□ 0.49
PCDHGA1Q9Y5H4 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHGA1Q9Y5H4 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHGA1Q9Y5H4 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.1■□□□□ 0.49
PCDHGA1Q9Y5H4 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PCDHGA1Q9Y5H4 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC18.1■□□□□ 0.49
PCDHGA1Q9Y5H4 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.1■□□□□ 0.49
PCDHGA1Q9Y5H4 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 TOB2P1-201ENST00000469761 992 ntBASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
PCDHGA1Q9Y5H4 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PCDHGA1Q9Y5H4 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PCDHGA1Q9Y5H4 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
PCDHGA1Q9Y5H4 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PCDHGA1Q9Y5H4 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.08■□□□□ 0.49
PCDHGA1Q9Y5H4 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PCDHGA1Q9Y5H4 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
PCDHGA1Q9Y5H4 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.08■□□□□ 0.49
PCDHGA1Q9Y5H4 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 AC079781.3-201ENST00000449110 356 ntBASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 FOSL1P1-201ENST00000511041 816 ntBASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 AP002469.2-201ENST00000531724 424 ntBASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PCDHGA1Q9Y5H4 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 AC104819.1-201ENST00000504587 486 ntBASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 RNF126P1-202ENST00000569893 925 ntBASIC18.07■□□□□ 0.48
PCDHGA1Q9Y5H4 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms