Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
TDP1Q9NUW8 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TDP1Q9NUW8 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
TDP1Q9NUW8 KRT8P7-201ENST00000533003 1432 ntBASIC19.42■□□□□ 0.7
TDP1Q9NUW8 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
TDP1Q9NUW8 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.41■□□□□ 0.7
TDP1Q9NUW8 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TDP1Q9NUW8 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TDP1Q9NUW8 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.41■□□□□ 0.7
TDP1Q9NUW8 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.41■□□□□ 0.7
TDP1Q9NUW8 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TDP1Q9NUW8 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TDP1Q9NUW8 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC19.41■□□□□ 0.7
TDP1Q9NUW8 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TDP1Q9NUW8 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.41■□□□□ 0.7
TDP1Q9NUW8 AC011498.5-201ENST00000592027 486 ntBASIC19.41■□□□□ 0.7
TDP1Q9NUW8 CLEC4GP1-201ENST00000596555 870 ntBASIC19.41■□□□□ 0.7
TDP1Q9NUW8 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TDP1Q9NUW8 AC079602.3-201ENST00000623931 403 ntBASIC19.41■□□□□ 0.7
TDP1Q9NUW8 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
TDP1Q9NUW8 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TDP1Q9NUW8 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.41■□□□□ 0.7
TDP1Q9NUW8 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TDP1Q9NUW8 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
TDP1Q9NUW8 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
TDP1Q9NUW8 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TDP1Q9NUW8 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.41■□□□□ 0.7
TDP1Q9NUW8 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.4■□□□□ 0.7
TDP1Q9NUW8 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.4■□□□□ 0.7
TDP1Q9NUW8 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TDP1Q9NUW8 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.4■□□□□ 0.7
TDP1Q9NUW8 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TDP1Q9NUW8 IRX1P1-201ENST00000438849 1838 ntBASIC19.4■□□□□ 0.7
TDP1Q9NUW8 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TDP1Q9NUW8 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TDP1Q9NUW8 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.4■□□□□ 0.7
TDP1Q9NUW8 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
TDP1Q9NUW8 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC19.4■□□□□ 0.7
TDP1Q9NUW8 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC19.4■□□□□ 0.7
TDP1Q9NUW8 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
TDP1Q9NUW8 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TDP1Q9NUW8 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
TDP1Q9NUW8 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TDP1Q9NUW8 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
TDP1Q9NUW8 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.4■□□□□ 0.7
TDP1Q9NUW8 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TDP1Q9NUW8 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TDP1Q9NUW8 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.4■□□□□ 0.7
TDP1Q9NUW8 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TDP1Q9NUW8 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
TDP1Q9NUW8 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TDP1Q9NUW8 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.39■□□□□ 0.69
TDP1Q9NUW8 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.39■□□□□ 0.69
TDP1Q9NUW8 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TDP1Q9NUW8 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TDP1Q9NUW8 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.39■□□□□ 0.69
TDP1Q9NUW8 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TDP1Q9NUW8 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TDP1Q9NUW8 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TDP1Q9NUW8 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
TDP1Q9NUW8 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.39■□□□□ 0.69
TDP1Q9NUW8 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TDP1Q9NUW8 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.39■□□□□ 0.69
TDP1Q9NUW8 HLA-F-220ENST00000434407 884 ntBASIC19.39■□□□□ 0.69
TDP1Q9NUW8 KRT18P23-201ENST00000435622 1283 ntBASIC19.39■□□□□ 0.69
TDP1Q9NUW8 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TDP1Q9NUW8 NPAP1P7-201ENST00000613027 823 ntBASIC19.39■□□□□ 0.69
TDP1Q9NUW8 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
TDP1Q9NUW8 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TDP1Q9NUW8 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC19.39■□□□□ 0.69
TDP1Q9NUW8 HOXB1-202ENST00000577092 1414 ntBASIC19.39■□□□□ 0.69
TDP1Q9NUW8 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TDP1Q9NUW8 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TDP1Q9NUW8 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
TDP1Q9NUW8 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TDP1Q9NUW8 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TDP1Q9NUW8 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
TDP1Q9NUW8 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.38■□□□□ 0.69
TDP1Q9NUW8 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
TDP1Q9NUW8 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TDP1Q9NUW8 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
TDP1Q9NUW8 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.38■□□□□ 0.69
TDP1Q9NUW8 AL450487.1-201ENST00000426799 995 ntBASIC19.38■□□□□ 0.69
TDP1Q9NUW8 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TDP1Q9NUW8 BX276092.5-203ENST00000456199 560 ntBASIC19.38■□□□□ 0.69
TDP1Q9NUW8 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TDP1Q9NUW8 KRT8P32-201ENST00000512863 1461 ntBASIC19.38■□□□□ 0.69
TDP1Q9NUW8 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.38■□□□□ 0.69
TDP1Q9NUW8 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.38■□□□□ 0.69
TDP1Q9NUW8 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.38■□□□□ 0.69
TDP1Q9NUW8 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.38■□□□□ 0.69
TDP1Q9NUW8 AL136038.4-201ENST00000603606 1261 ntBASIC19.38■□□□□ 0.69
TDP1Q9NUW8 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TDP1Q9NUW8 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.38■□□□□ 0.69
TDP1Q9NUW8 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.38■□□□□ 0.69
TDP1Q9NUW8 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.38■□□□□ 0.69
TDP1Q9NUW8 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
TDP1Q9NUW8 AL391807.1-203ENST00000604392 2365 ntBASIC19.37■□□□□ 0.69
TDP1Q9NUW8 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms