Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.24■□□□□ 0.67
TRIM56Q9BRZ2 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM56Q9BRZ2 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
TRIM56Q9BRZ2 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 AC093525.10-201ENST00000625130 1569 ntBASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 KRT17P3-201ENST00000420566 1262 ntBASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 AL160286.2-201ENST00000567150 934 ntBASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 KRT8P41-201ENST00000533985 1514 ntBASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
TRIM56Q9BRZ2 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM56Q9BRZ2 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 POU5F1P3-201ENST00000428824 1078 ntBASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.21■□□□□ 0.67
TRIM56Q9BRZ2 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms