Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTCHD1Q96NR3 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.77■□□□□ 0.44
PTCHD1Q96NR3 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTCHD1Q96NR3 LIN28AP1-201ENST00000429574 405 ntBASIC17.77■□□□□ 0.44
PTCHD1Q96NR3 AL137013.1-201ENST00000432946 1228 ntBASIC17.77■□□□□ 0.44
PTCHD1Q96NR3 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTCHD1Q96NR3 AP003041.3-201ENST00000527151 707 ntBASIC17.77■□□□□ 0.44
PTCHD1Q96NR3 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.77■□□□□ 0.44
PTCHD1Q96NR3 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.77■□□□□ 0.44
PTCHD1Q96NR3 FAM87A-204ENST00000613235 858 ntBASIC17.77■□□□□ 0.44
PTCHD1Q96NR3 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.77■□□□□ 0.44
PTCHD1Q96NR3 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.77■□□□□ 0.44
PTCHD1Q96NR3 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
PTCHD1Q96NR3 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
PTCHD1Q96NR3 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.77■□□□□ 0.43
PTCHD1Q96NR3 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
PTCHD1Q96NR3 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
PTCHD1Q96NR3 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PTCHD1Q96NR3 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
PTCHD1Q96NR3 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PTCHD1Q96NR3 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.77■□□□□ 0.43
PTCHD1Q96NR3 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
PTCHD1Q96NR3 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
PTCHD1Q96NR3 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
PTCHD1Q96NR3 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 HMGA1P5-201ENST00000412453 271 ntBASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD1Q96NR3 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 AC113347.1-201ENST00000413321 391 ntBASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 ATP5G1P1-201ENST00000448724 379 ntBASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 KRT18P21-201ENST00000515767 1272 ntBASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTCHD1Q96NR3 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 KRT8P3-201ENST00000519669 1449 ntBASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 AC005521.1-201ENST00000393351 872 ntBASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.74■□□□□ 0.43
PTCHD1Q96NR3 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms