Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 DNAJC21-205ENST00000512136 2516 ntTSL 210.9□□□□□ -0.672e-7■■■□□ 18.2
UPF1Q92900 DNAJC21-203ENST00000506762 402 ntTSL 210.04□□□□□ -0.82e-7■■■□□ 18.2
UPF1Q92900 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC21.68■■□□□ 1.061e-6■■■□□ 18.2
UPF1Q92900 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41e-6■■■□□ 18.2
UPF1Q92900 PARP16-204ENST00000559805 678 ntTSL 211.55□□□□□ -0.561e-6■■■□□ 18.2
UPF1Q92900 GOSR2-233ENST00000640068 3103 ntTSL 5 BASIC14.97□□□□□ -0.011e-8■■■□□ 18.2
UPF1Q92900 DPM2-202ENST00000373110 738 ntTSL 2 BASIC20.75■□□□□ 0.915e-7■■■□□ 18.2
UPF1Q92900 PTPN7-217ENST00000495688 2689 ntTSL 1 (best)12.69□□□□□ -0.386e-7■■■□□ 18.2
UPF1Q92900 PTPN7-202ENST00000367279 3265 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.486e-7■■■□□ 18.2
UPF1Q92900 PTPN7-201ENST00000309017 3765 ntAPPRIS P4 TSL 1 (best) BASIC10.97□□□□□ -0.656e-7■■■□□ 18.2
UPF1Q92900 CHST15-201ENST00000346248 4810 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.462e-7■■■□□ 18.2
UPF1Q92900 CHST15-202ENST00000435907 4820 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.552e-7■■■□□ 18.2
UPF1Q92900 FASN-205ENST00000584610 857 ntTSL 226.48■■□□□ 1.832e-24■■■□□ 18.2
UPF1Q92900 FASN-202ENST00000578424 951 ntTSL 226.04■■□□□ 1.762e-24■■■□□ 18.2
UPF1Q92900 GTF3C5-210ENST00000489842 696 ntTSL 213.45□□□□□ -0.268e-9■■■□□ 18.2
UPF1Q92900 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.315e-8■■■□□ 18.2
UPF1Q92900 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.015e-8■■■□□ 18.2
UPF1Q92900 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC27.12■■□□□ 1.939e-8■■■□□ 18.2
UPF1Q92900 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC24.9■■□□□ 1.589e-8■■■□□ 18.2
UPF1Q92900 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC23.44■■□□□ 1.349e-8■■■□□ 18.2
UPF1Q92900 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC22.09■■□□□ 1.139e-8■■■□□ 18.2
UPF1Q92900 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.839e-8■■■□□ 18.2
UPF1Q92900 OTUB1-201ENST00000301453 2493 ntTSL 216■□□□□ 0.159e-8■■■□□ 18.2
UPF1Q92900 ATG13-202ENST00000395549 937 ntTSL 523.37■■□□□ 1.333e-7■■■□□ 18.2
UPF1Q92900 ATG13-222ENST00000534610 1655 ntTSL 519.78■□□□□ 0.763e-7■■■□□ 18.2
UPF1Q92900 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC29.11■■■□□ 2.251e-7■■■□□ 18.2
UPF1Q92900 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC28.31■■■□□ 2.121e-7■■■□□ 18.2
UPF1Q92900 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC23.73■■□□□ 1.391e-7■■■□□ 18.2
UPF1Q92900 XBP1-206ENST00000484256 2173 ntTSL 214.53□□□□□ -0.081e-7■■■□□ 18.2
UPF1Q92900 XBP1-204ENST00000405219 1690 ntTSL 2 BASIC14.29□□□□□ -0.121e-7■■■□□ 18.2
UPF1Q92900 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC29.48■■■□□ 2.311e-8■■■□□ 18.2
UPF1Q92900 CFL1-206ENST00000527344 962 ntTSL 2 BASIC21.27■■□□□ 11e-8■■■□□ 18.2
UPF1Q92900 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC19.54■□□□□ 0.721e-7■■■□□ 18.2
UPF1Q92900 DUXAP9-205ENST00000619938 642 ntTSL 1 (best)16.32■□□□□ 0.21e-7■■■□□ 18.2
UPF1Q92900 DUXAP9-203ENST00000610585 903 ntTSL 315.51■□□□□ 0.071e-7■■■□□ 18.2
UPF1Q92900 DUXAP9-207ENST00000621361 2397 ntTSL 1 (best)9.35□□□□□ -0.911e-7■■■□□ 18.2
UPF1Q92900 HIP1-201ENST00000336926 8013 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.973e-6■■■□□ 18.2
UPF1Q92900 RALB-207ENST00000470417 1931 ntTSL 327.17■■□□□ 1.944e-7■■■□□ 18.2
UPF1Q92900 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.484e-7■■■□□ 18.2
UPF1Q92900 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC24.24■■□□□ 1.471e-8■■■□□ 18.2
UPF1Q92900 CFL1-202ENST00000524553 860 ntTSL 2 BASIC24.74■■□□□ 1.552e-8■■■□□ 18.2
UPF1Q92900 PHLDB1-222ENST00000534140 3128 ntTSL 215.77■□□□□ 0.115e-7■■■□□ 18.2
UPF1Q92900 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.15e-7■■■□□ 18.2
UPF1Q92900 PHLDB1-218ENST00000530994 5945 ntTSL 215.46■□□□□ 0.075e-7■■■□□ 18.2
UPF1Q92900 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.035e-7■■■□□ 18.2
UPF1Q92900 PHLDB1-213ENST00000527898 2921 ntTSL 214.76□□□□□ -0.055e-7■■■□□ 18.2
UPF1Q92900 PHLDB1-214ENST00000528594 5787 ntTSL 214.72□□□□□ -0.055e-7■■■□□ 18.2
UPF1Q92900 PHLDB1-220ENST00000532517 5242 ntTSL 1 (best)14.56□□□□□ -0.085e-7■■■□□ 18.2
UPF1Q92900 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.245e-7■■■□□ 18.2
UPF1Q92900 PHLDB1-225ENST00000614369 3442 ntTSL 1 (best)13.38□□□□□ -0.275e-7■■■□□ 18.2
UPF1Q92900 PRKRIP1-203ENST00000468316 2045 ntTSL 1 (best)18.06■□□□□ 0.482e-6■■■□□ 18.2
UPF1Q92900 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.242e-6■■■□□ 18.2
UPF1Q92900 PRKRIP1-206ENST00000482465 2257 ntTSL 216.52■□□□□ 0.242e-6■■■□□ 18.2
UPF1Q92900 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.012e-6■■■□□ 18.2
UPF1Q92900 ABCC1-204ENST00000572882 4565 ntTSL 1 (best)10.34□□□□□ -0.756e-10■■■□□ 18.2
UPF1Q92900 LSM4-201ENST00000252816 986 ntTSL 2 BASIC32.31■■■□□ 2.768e-33■■■□□ 18.1
UPF1Q92900 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.828e-33■■■□□ 18.1
UPF1Q92900 LSM4-206ENST00000600289 1113 ntTSL 224.2■■□□□ 1.468e-33■■■□□ 18.1
UPF1Q92900 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC28.03■■■□□ 2.085e-6■■■□□ 18.1
UPF1Q92900 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.44■□□□□ 0.389e-22■■■□□ 18.1
UPF1Q92900 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.059e-22■■■□□ 18.1
UPF1Q92900 OSMR-203ENST00000508882 361 ntTSL 313.91□□□□□ -0.185e-7■■■□□ 18.1
UPF1Q92900 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.195e-7■■■□□ 18.1
UPF1Q92900 OSMR-204ENST00000509237 653 ntTSL 59.51□□□□□ -0.895e-7■■■□□ 18.1
UPF1Q92900 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.35e-7■■■□□ 18.1
UPF1Q92900 NONO-203ENST00000373856 1921 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.092e-21■■■□□ 18.1
UPF1Q92900 NONO-212ENST00000474431 644 ntTSL 512.49□□□□□ -0.412e-21■■■□□ 18.1
UPF1Q92900 OTUD5-205ENST00000455452 2077 ntTSL 526.34■■□□□ 1.811e-6■■■□□ 18.1
UPF1Q92900 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.61e-6■■■□□ 18.1
UPF1Q92900 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC24.58■■□□□ 1.531e-6■■■□□ 18.1
UPF1Q92900 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC24.38■■□□□ 1.491e-6■■■□□ 18.1
UPF1Q92900 PRDX2-202ENST00000334482 784 ntTSL 3 BASIC19.01■□□□□ 0.639e-29■■■□□ 18.1
UPF1Q92900 PRDX2-201ENST00000301522 987 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.399e-29■■■□□ 18.1
UPF1Q92900 PRDX2-203ENST00000466174 1717 ntTSL 1 (best)14.5□□□□□ -0.099e-29■■■□□ 18.1
UPF1Q92900 HOOK2-213ENST00000589765 108 ntTSL 512.39□□□□□ -0.439e-29■■■□□ 18.1
UPF1Q92900 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC37.38■■■■□ 3.574e-8■■■□□ 18.1
UPF1Q92900 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC33.63■■■□□ 2.974e-8■■■□□ 18.1
UPF1Q92900 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC33.39■■■□□ 2.944e-8■■■□□ 18.1
UPF1Q92900 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC32.44■■■□□ 2.784e-8■■■□□ 18.1
UPF1Q92900 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC32.38■■■□□ 2.774e-8■■■□□ 18.1
UPF1Q92900 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC30.85■■■□□ 2.534e-8■■■□□ 18.1
UPF1Q92900 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.424e-8■■■□□ 18.1
UPF1Q92900 SYNRG-218ENST00000612641 280 ntTSL 39.47□□□□□ -0.892e-6■■■□□ 18.1
UPF1Q92900 DSTYK-202ENST00000367162 7874 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.723e-6■■■□□ 18.1
UPF1Q92900 DSTYK-201ENST00000367161 7739 ntTSL 1 (best) BASIC10.19□□□□□ -0.783e-6■■■□□ 18.1
UPF1Q92900 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC24.35■■□□□ 1.496e-8■■■□□ 18.1
UPF1Q92900 PQLC2-205ENST00000469076 1512 ntTSL 227.73■■■□□ 2.035e-6■■■□□ 18.1
UPF1Q92900 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC27.3■■□□□ 1.965e-6■■■□□ 18.1
UPF1Q92900 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.485e-6■■■□□ 18.1
UPF1Q92900 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.015e-6■■■□□ 18.1
UPF1Q92900 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.34■□□□□ 0.693e-6■■■□□ 18.1
UPF1Q92900 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.63e-6■■■□□ 18.1
UPF1Q92900 RIC8A-203ENST00000526104 3703 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.423e-6■■■□□ 18.1
UPF1Q92900 GCN1-201ENST00000300648 8675 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.664e-9■■■□□ 18.1
UPF1Q92900 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.072e-8■■■□□ 18.1
UPF1Q92900 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.355e-8■■■□□ 18.1
UPF1Q92900 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC29.07■■■□□ 2.245e-8■■■□□ 18.1
UPF1Q92900 RAB24-207ENST00000495458 1608 ntTSL 226.74■■□□□ 1.875e-8■■■□□ 18.1
UPF1Q92900 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.745e-8■■■□□ 18.1
UPF1Q92900 RAB24-206ENST00000478234 1820 ntTSL 225.27■■□□□ 1.645e-8■■■□□ 18.1
Retrieved 100 of 15,879 protein–RNA pairs in 90.4 ms