Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.57■□□□□ 0.72
ATG4AQ8WYN0 AC239809.2-201ENST00000415381 517 ntBASIC19.57■□□□□ 0.72
ATG4AQ8WYN0 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
ATG4AQ8WYN0 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC19.57■□□□□ 0.72
ATG4AQ8WYN0 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
ATG4AQ8WYN0 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
ATG4AQ8WYN0 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
ATG4AQ8WYN0 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC19.57■□□□□ 0.72
ATG4AQ8WYN0 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ATG4AQ8WYN0 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
ATG4AQ8WYN0 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
ATG4AQ8WYN0 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19.57■□□□□ 0.72
ATG4AQ8WYN0 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 SERF2-207ENST00000409614 582 ntTSL 2 BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 MMAB-206ENST00000540016 945 ntTSL 3 BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.56■□□□□ 0.72
ATG4AQ8WYN0 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 CD276-201ENST00000318424 2738 ntTSL 5 BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.55■□□□□ 0.72
ATG4AQ8WYN0 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 RCC2P6-201ENST00000526625 1557 ntBASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 ID1-201ENST00000376105 1233 ntBASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4AQ8WYN0 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ATG4AQ8WYN0 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms