Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CLRN3Q8NCR9 HYMAI-201ENST00000635591 3347 ntBASIC15.07■□□□□ 0
CLRN3Q8NCR9 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC15.07■□□□□ 0
CLRN3Q8NCR9 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
CLRN3Q8NCR9 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
CLRN3Q8NCR9 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC15.07■□□□□ 0
CLRN3Q8NCR9 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC15.06■□□□□ 0
CLRN3Q8NCR9 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC15.06■□□□□ 0
CLRN3Q8NCR9 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.06■□□□□ 0
CLRN3Q8NCR9 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
CLRN3Q8NCR9 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
CLRN3Q8NCR9 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC15.06■□□□□ 0
CLRN3Q8NCR9 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
CLRN3Q8NCR9 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
CLRN3Q8NCR9 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
CLRN3Q8NCR9 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
CLRN3Q8NCR9 AC092028.1-203ENST00000608262 953 ntBASIC15.06■□□□□ 0
CLRN3Q8NCR9 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC15.06■□□□□ 0
CLRN3Q8NCR9 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.06■□□□□ 0
CLRN3Q8NCR9 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC15.06■□□□□ 0
CLRN3Q8NCR9 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.06■□□□□ 0
CLRN3Q8NCR9 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC15.06■□□□□ 0
CLRN3Q8NCR9 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CLRN3Q8NCR9 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC15.06■□□□□ 0
CLRN3Q8NCR9 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.05■□□□□ 0
CLRN3Q8NCR9 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
CLRN3Q8NCR9 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
CLRN3Q8NCR9 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC15.05■□□□□ 0
CLRN3Q8NCR9 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
CLRN3Q8NCR9 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC15.05■□□□□ 0
CLRN3Q8NCR9 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.05■□□□□ 0
CLRN3Q8NCR9 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC15.05■□□□□ 0
CLRN3Q8NCR9 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.05■□□□□ 0
CLRN3Q8NCR9 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
CLRN3Q8NCR9 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC15.05■□□□□ -0
CLRN3Q8NCR9 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC15.05■□□□□ -0
CLRN3Q8NCR9 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC15.05■□□□□ -0
CLRN3Q8NCR9 SLC25A6P5-201ENST00000435663 894 ntBASIC15.05■□□□□ -0
CLRN3Q8NCR9 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC15.05■□□□□ -0
CLRN3Q8NCR9 AC241377.3-202ENST00000626088 1088 ntBASIC15.05■□□□□ -0
CLRN3Q8NCR9 AC241585.3-202ENST00000628937 1088 ntBASIC15.05■□□□□ -0
CLRN3Q8NCR9 AC245100.8-202ENST00000629247 1058 ntBASIC15.05■□□□□ -0
CLRN3Q8NCR9 AL035685.1-201ENST00000636663 812 ntBASIC15.05■□□□□ -0
CLRN3Q8NCR9 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CLRN3Q8NCR9 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC15.05■□□□□ -0
CLRN3Q8NCR9 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CLRN3Q8NCR9 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC15.05■□□□□ -0
CLRN3Q8NCR9 ANO7L1-203ENST00000602586 1720 ntBASIC15.05■□□□□ -0
CLRN3Q8NCR9 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC15.05■□□□□ -0
CLRN3Q8NCR9 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
CLRN3Q8NCR9 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC15.05■□□□□ -0
CLRN3Q8NCR9 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CLRN3Q8NCR9 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
CLRN3Q8NCR9 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CLRN3Q8NCR9 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
CLRN3Q8NCR9 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CLRN3Q8NCR9 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC15.05■□□□□ -0
CLRN3Q8NCR9 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
CLRN3Q8NCR9 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC15.05■□□□□ -0
CLRN3Q8NCR9 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC15.05■□□□□ -0
CLRN3Q8NCR9 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.05■□□□□ -0
CLRN3Q8NCR9 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
CLRN3Q8NCR9 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC15.05■□□□□ -0
CLRN3Q8NCR9 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.05■□□□□ -0
CLRN3Q8NCR9 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC15.05■□□□□ -0
CLRN3Q8NCR9 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN3Q8NCR9 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN3Q8NCR9 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.04■□□□□ -0
CLRN3Q8NCR9 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.04■□□□□ -0
CLRN3Q8NCR9 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN3Q8NCR9 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC15.04■□□□□ -0
CLRN3Q8NCR9 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN3Q8NCR9 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN3Q8NCR9 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CLRN3Q8NCR9 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms