Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 CYP2D8P-201ENST00000433633 1490 ntBASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTCHD3Q3KNS1 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 RCN1P1-201ENST00000400413 996 ntBASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 MIR1224-201ENST00000408193 85 ntBASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 NAPSB-206ENST00000562112 1266 ntBASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTCHD3Q3KNS1 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 FAM207BP-201ENST00000447172 505 ntBASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.41■□□□□ 0.54
PTCHD3Q3KNS1 LINC01568-207ENST00000641790 1380 ntBASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms