Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC11.68□□□□□ -0.54
HSPG2P98160 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC11.68□□□□□ -0.54
HSPG2P98160 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC11.68□□□□□ -0.54
HSPG2P98160 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC11.68□□□□□ -0.54
HSPG2P98160 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC11.68□□□□□ -0.54
HSPG2P98160 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC11.68□□□□□ -0.54
HSPG2P98160 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
HSPG2P98160 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HSPG2P98160 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
HSPG2P98160 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
HSPG2P98160 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
HSPG2P98160 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC11.68□□□□□ -0.54
HSPG2P98160 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC11.68□□□□□ -0.54
HSPG2P98160 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HSPG2P98160 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC11.68□□□□□ -0.54
HSPG2P98160 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC11.68□□□□□ -0.54
HSPG2P98160 ALG1L5P-201ENST00000482043 771 ntBASIC11.68□□□□□ -0.54
HSPG2P98160 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
HSPG2P98160 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
HSPG2P98160 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC11.68□□□□□ -0.54
HSPG2P98160 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
HSPG2P98160 ANKRD18DP-204ENST00000455355 1975 ntBASIC11.68□□□□□ -0.54
HSPG2P98160 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HSPG2P98160 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
HSPG2P98160 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
HSPG2P98160 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
HSPG2P98160 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HSPG2P98160 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC11.67□□□□□ -0.54
HSPG2P98160 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
HSPG2P98160 PBK-203ENST00000522944 1499 ntTSL 2 BASIC11.67□□□□□ -0.54
HSPG2P98160 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
HSPG2P98160 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
HSPG2P98160 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC11.67□□□□□ -0.54
HSPG2P98160 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC11.67□□□□□ -0.54
HSPG2P98160 AC114341.1-201ENST00000618070 349 ntBASIC11.67□□□□□ -0.54
HSPG2P98160 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
HSPG2P98160 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC11.67□□□□□ -0.54
HSPG2P98160 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HSPG2P98160 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HSPG2P98160 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HSPG2P98160 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
HSPG2P98160 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
HSPG2P98160 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC11.67□□□□□ -0.54
HSPG2P98160 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC11.67□□□□□ -0.54
HSPG2P98160 RPL28-205ENST00000558131 444 ntTSL 5 BASIC11.67□□□□□ -0.54
HSPG2P98160 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC11.67□□□□□ -0.54
HSPG2P98160 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC11.67□□□□□ -0.54
HSPG2P98160 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HSPG2P98160 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
HSPG2P98160 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
HSPG2P98160 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HSPG2P98160 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
HSPG2P98160 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
HSPG2P98160 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
HSPG2P98160 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
HSPG2P98160 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
HSPG2P98160 RPS2P1-201ENST00000434010 821 ntBASIC11.67□□□□□ -0.54
HSPG2P98160 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
HSPG2P98160 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC11.67□□□□□ -0.54
HSPG2P98160 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC11.66□□□□□ -0.54
HSPG2P98160 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HSPG2P98160 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
HSPG2P98160 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC11.66□□□□□ -0.54
HSPG2P98160 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HSPG2P98160 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HSPG2P98160 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
HSPG2P98160 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC11.66□□□□□ -0.54
HSPG2P98160 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC11.66□□□□□ -0.54
HSPG2P98160 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HSPG2P98160 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
HSPG2P98160 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC11.66□□□□□ -0.54
HSPG2P98160 GOLGA6L5P-202ENST00000515341 1828 ntBASIC11.66□□□□□ -0.54
HSPG2P98160 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HSPG2P98160 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HSPG2P98160 LSR-203ENST00000360798 1963 ntTSL 2 BASIC11.66□□□□□ -0.54
HSPG2P98160 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
HSPG2P98160 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
HSPG2P98160 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
HSPG2P98160 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC11.66□□□□□ -0.54
HSPG2P98160 CAND2-206ENST00000626378 333 ntTSL 5 BASIC11.66□□□□□ -0.54
HSPG2P98160 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC11.66□□□□□ -0.54
HSPG2P98160 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC11.66□□□□□ -0.54
HSPG2P98160 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HSPG2P98160 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC11.66□□□□□ -0.54
HSPG2P98160 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HSPG2P98160 BEX3-201ENST00000361298 921 ntTSL 2 BASIC11.66□□□□□ -0.54
HSPG2P98160 HIST2H3DP1-201ENST00000401004 416 ntBASIC11.66□□□□□ -0.54
HSPG2P98160 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC11.66□□□□□ -0.54
HSPG2P98160 GZMM-202ENST00000592501 941 ntTSL 3 BASIC11.66□□□□□ -0.54
HSPG2P98160 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
HSPG2P98160 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HSPG2P98160 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
HSPG2P98160 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
HSPG2P98160 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC11.66□□□□□ -0.54
HSPG2P98160 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
HSPG2P98160 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HSPG2P98160 PMP22-202ENST00000395936 816 ntTSL 3 BASIC11.65□□□□□ -0.54
HSPG2P98160 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC11.65□□□□□ -0.54
HSPG2P98160 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
HSPG2P98160 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC11.65□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms