Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.45■□□□□ 0.38
RNF4P78317 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF4P78317 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
RNF4P78317 AL049812.1-201ENST00000432563 2267 ntBASIC17.45■□□□□ 0.38
RNF4P78317 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RNF4P78317 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF4P78317 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF4P78317 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF4P78317 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF4P78317 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
RNF4P78317 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF4P78317 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF4P78317 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF4P78317 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RNF4P78317 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
RNF4P78317 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF4P78317 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF4P78317 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF4P78317 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF4P78317 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF4P78317 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF4P78317 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC17.44■□□□□ 0.38
RNF4P78317 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
RNF4P78317 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.44■□□□□ 0.38
RNF4P78317 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.44■□□□□ 0.38
RNF4P78317 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC17.44■□□□□ 0.38
RNF4P78317 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.44■□□□□ 0.38
RNF4P78317 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.44■□□□□ 0.38
RNF4P78317 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF4P78317 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.44■□□□□ 0.38
RNF4P78317 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.44■□□□□ 0.38
RNF4P78317 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RNF4P78317 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.44■□□□□ 0.38
RNF4P78317 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF4P78317 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF4P78317 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RNF4P78317 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF4P78317 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF4P78317 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.44■□□□□ 0.38
RNF4P78317 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.43■□□□□ 0.38
RNF4P78317 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RNF4P78317 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF4P78317 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
RNF4P78317 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF4P78317 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
RNF4P78317 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF4P78317 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF4P78317 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.43■□□□□ 0.38
RNF4P78317 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC17.43■□□□□ 0.38
RNF4P78317 MCCD1P1-208ENST00000445732 328 ntBASIC17.43■□□□□ 0.38
RNF4P78317 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RNF4P78317 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.43■□□□□ 0.38
RNF4P78317 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.43■□□□□ 0.38
RNF4P78317 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.43■□□□□ 0.38
RNF4P78317 AC141257.4-201ENST00000634557 245 ntBASIC17.43■□□□□ 0.38
RNF4P78317 AC136944.6-201ENST00000634818 245 ntBASIC17.43■□□□□ 0.38
RNF4P78317 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF4P78317 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RNF4P78317 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RNF4P78317 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF4P78317 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF4P78317 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RNF4P78317 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.43■□□□□ 0.38
RNF4P78317 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RNF4P78317 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF4P78317 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.42■□□□□ 0.38
RNF4P78317 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF4P78317 RCC2P3-201ENST00000418112 1537 ntBASIC17.42■□□□□ 0.38
RNF4P78317 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF4P78317 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF4P78317 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF4P78317 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF4P78317 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF4P78317 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
RNF4P78317 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RNF4P78317 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF4P78317 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF4P78317 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RNF4P78317 BX664615.1-201ENST00000443558 458 ntBASIC17.42■□□□□ 0.38
RNF4P78317 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.42■□□□□ 0.38
RNF4P78317 CR769767.2-201ENST00000622735 460 ntBASIC17.42■□□□□ 0.38
RNF4P78317 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF4P78317 KRT8P32-201ENST00000512863 1461 ntBASIC17.42■□□□□ 0.38
RNF4P78317 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF4P78317 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.42■□□□□ 0.38
RNF4P78317 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF4P78317 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
RNF4P78317 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
RNF4P78317 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
RNF4P78317 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF4P78317 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF4P78317 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC17.41■□□□□ 0.38
RNF4P78317 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
RNF4P78317 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF4P78317 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.41■□□□□ 0.38
RNF4P78317 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
RNF4P78317 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.41■□□□□ 0.38
RNF4P78317 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF4P78317 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF4P78317 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms