Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.17■□□□□ 0.82
VCPP55072 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC20.17■□□□□ 0.82
VCPP55072 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.17■□□□□ 0.82
VCPP55072 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCPP55072 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCPP55072 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCPP55072 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCPP55072 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCPP55072 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
VCPP55072 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCPP55072 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCPP55072 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCPP55072 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCPP55072 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
VCPP55072 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.16■□□□□ 0.82
VCPP55072 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
VCPP55072 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCPP55072 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.16■□□□□ 0.82
VCPP55072 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
VCPP55072 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VCPP55072 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VCPP55072 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.16■□□□□ 0.82
VCPP55072 AL671277.2-201ENST00000458060 996 ntBASIC20.16■□□□□ 0.82
VCPP55072 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.16■□□□□ 0.82
VCPP55072 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.16■□□□□ 0.82
VCPP55072 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.16■□□□□ 0.82
VCPP55072 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.16■□□□□ 0.82
VCPP55072 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCPP55072 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
VCPP55072 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCPP55072 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCPP55072 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCPP55072 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC20.16■□□□□ 0.82
VCPP55072 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCPP55072 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCPP55072 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VCPP55072 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.16■□□□□ 0.82
VCPP55072 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCPP55072 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCPP55072 LINC01465-201ENST00000408887 1940 ntBASIC20.15■□□□□ 0.82
VCPP55072 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
VCPP55072 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.15■□□□□ 0.82
VCPP55072 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
VCPP55072 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.15■□□□□ 0.82
VCPP55072 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VCPP55072 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VCPP55072 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
VCPP55072 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VCPP55072 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC20.15■□□□□ 0.82
VCPP55072 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC20.15■□□□□ 0.82
VCPP55072 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
VCPP55072 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.15■□□□□ 0.82
VCPP55072 CD81-212ENST00000526072 1172 ntTSL 5 BASIC20.15■□□□□ 0.82
VCPP55072 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.15■□□□□ 0.82
VCPP55072 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.15■□□□□ 0.82
VCPP55072 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VCPP55072 AL445675.2-201ENST00000620291 557 ntBASIC20.15■□□□□ 0.82
VCPP55072 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC20.15■□□□□ 0.82
VCPP55072 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.15■□□□□ 0.82
VCPP55072 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VCPP55072 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
VCPP55072 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
VCPP55072 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VCPP55072 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.15■□□□□ 0.82
VCPP55072 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.15■□□□□ 0.82
VCPP55072 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
VCPP55072 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VCPP55072 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VCPP55072 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.15■□□□□ 0.82
VCPP55072 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VCPP55072 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
VCPP55072 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
VCPP55072 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.14■□□□□ 0.82
VCPP55072 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VCPP55072 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.14■□□□□ 0.81
VCPP55072 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VCPP55072 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VCPP55072 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VCPP55072 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VCPP55072 AL359075.1-203ENST00000462729 1002 ntBASIC20.14■□□□□ 0.81
VCPP55072 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC20.14■□□□□ 0.81
VCPP55072 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VCPP55072 AC006538.3-201ENST00000612495 578 ntBASIC20.14■□□□□ 0.81
VCPP55072 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.14■□□□□ 0.81
VCPP55072 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.14■□□□□ 0.81
VCPP55072 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
VCPP55072 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
VCPP55072 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
VCPP55072 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VCPP55072 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC20.13■□□□□ 0.81
VCPP55072 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
VCPP55072 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VCPP55072 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VCPP55072 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
VCPP55072 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
VCPP55072 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.13■□□□□ 0.81
VCPP55072 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VCPP55072 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VCPP55072 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VCPP55072 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms