Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.7■□□□□ 0.74
EPHB3P54753 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.7■□□□□ 0.74
EPHB3P54753 AL645929.1-201ENST00000420084 975 ntBASIC19.7■□□□□ 0.74
EPHB3P54753 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
EPHB3P54753 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.7■□□□□ 0.74
EPHB3P54753 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
EPHB3P54753 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
EPHB3P54753 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
EPHB3P54753 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
EPHB3P54753 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
EPHB3P54753 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.7■□□□□ 0.74
EPHB3P54753 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
EPHB3P54753 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.69■□□□□ 0.74
EPHB3P54753 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
EPHB3P54753 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
EPHB3P54753 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
EPHB3P54753 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.69■□□□□ 0.74
EPHB3P54753 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
EPHB3P54753 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
EPHB3P54753 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
EPHB3P54753 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC19.69■□□□□ 0.74
EPHB3P54753 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
EPHB3P54753 HCG4P8-203ENST00000443049 980 ntBASIC19.69■□□□□ 0.74
EPHB3P54753 SPDYE13P-201ENST00000445314 798 ntBASIC19.69■□□□□ 0.74
EPHB3P54753 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC19.69■□□□□ 0.74
EPHB3P54753 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC19.69■□□□□ 0.74
EPHB3P54753 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
EPHB3P54753 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC19.69■□□□□ 0.74
EPHB3P54753 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
EPHB3P54753 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
EPHB3P54753 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.69■□□□□ 0.74
EPHB3P54753 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.69■□□□□ 0.74
EPHB3P54753 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
EPHB3P54753 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC19.69■□□□□ 0.74
EPHB3P54753 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
EPHB3P54753 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
EPHB3P54753 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
EPHB3P54753 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
EPHB3P54753 AC008556.1-201ENST00000610908 2040 ntBASIC19.68■□□□□ 0.74
EPHB3P54753 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
EPHB3P54753 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
EPHB3P54753 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
EPHB3P54753 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
EPHB3P54753 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.68■□□□□ 0.74
EPHB3P54753 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.68■□□□□ 0.74
EPHB3P54753 IRX1P1-201ENST00000438849 1838 ntBASIC19.68■□□□□ 0.74
EPHB3P54753 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
EPHB3P54753 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.68■□□□□ 0.74
EPHB3P54753 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.68■□□□□ 0.74
EPHB3P54753 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.68■□□□□ 0.74
EPHB3P54753 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC19.68■□□□□ 0.74
EPHB3P54753 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC19.68■□□□□ 0.74
EPHB3P54753 NDUFV2-AS1-203ENST00000608008 779 ntBASIC19.68■□□□□ 0.74
EPHB3P54753 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.68■□□□□ 0.74
EPHB3P54753 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
EPHB3P54753 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
EPHB3P54753 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
EPHB3P54753 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
EPHB3P54753 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.68■□□□□ 0.74
EPHB3P54753 KRT8P7-201ENST00000533003 1432 ntBASIC19.68■□□□□ 0.74
EPHB3P54753 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.67■□□□□ 0.74
EPHB3P54753 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
EPHB3P54753 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.67■□□□□ 0.74
EPHB3P54753 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
EPHB3P54753 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
EPHB3P54753 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.67■□□□□ 0.74
EPHB3P54753 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
EPHB3P54753 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.67■□□□□ 0.74
EPHB3P54753 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
EPHB3P54753 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
EPHB3P54753 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
EPHB3P54753 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
EPHB3P54753 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.67■□□□□ 0.74
EPHB3P54753 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.67■□□□□ 0.74
EPHB3P54753 KRT18P48-201ENST00000434763 852 ntBASIC19.67■□□□□ 0.74
EPHB3P54753 KRT18P23-201ENST00000435622 1283 ntBASIC19.67■□□□□ 0.74
EPHB3P54753 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC19.67■□□□□ 0.74
EPHB3P54753 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC19.67■□□□□ 0.74
EPHB3P54753 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.67■□□□□ 0.74
EPHB3P54753 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
EPHB3P54753 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
EPHB3P54753 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
EPHB3P54753 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
EPHB3P54753 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
EPHB3P54753 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.67■□□□□ 0.74
EPHB3P54753 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
EPHB3P54753 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
EPHB3P54753 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
EPHB3P54753 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
EPHB3P54753 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
EPHB3P54753 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
EPHB3P54753 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.66■□□□□ 0.74
EPHB3P54753 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC19.66■□□□□ 0.74
EPHB3P54753 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.66■□□□□ 0.74
EPHB3P54753 MIR3917-201ENST00000580971 93 ntBASIC19.66■□□□□ 0.74
EPHB3P54753 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC19.66■□□□□ 0.74
EPHB3P54753 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
EPHB3P54753 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
EPHB3P54753 AL157888.1-201ENST00000631930 593 ntBASIC19.66■□□□□ 0.74
EPHB3P54753 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms