Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDX1P47902 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDX1P47902 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CDX1P47902 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC15.38■□□□□ 0.05
CDX1P47902 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC15.38■□□□□ 0.05
CDX1P47902 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC15.38■□□□□ 0.05
CDX1P47902 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC15.38■□□□□ 0.05
CDX1P47902 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CDX1P47902 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CDX1P47902 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
CDX1P47902 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC15.38■□□□□ 0.05
CDX1P47902 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDX1P47902 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
CDX1P47902 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDX1P47902 NBPF21P-201ENST00000425093 1451 ntBASIC15.38■□□□□ 0.05
CDX1P47902 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC15.38■□□□□ 0.05
CDX1P47902 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC15.38■□□□□ 0.05
CDX1P47902 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDX1P47902 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
CDX1P47902 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC15.37■□□□□ 0.05
CDX1P47902 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CDX1P47902 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC15.37■□□□□ 0.05
CDX1P47902 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CDX1P47902 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC15.37■□□□□ 0.05
CDX1P47902 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CDX1P47902 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC15.37■□□□□ 0.05
CDX1P47902 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDX1P47902 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CDX1P47902 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDX1P47902 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
CDX1P47902 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDX1P47902 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC15.37■□□□□ 0.05
CDX1P47902 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDX1P47902 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
CDX1P47902 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC15.37■□□□□ 0.05
CDX1P47902 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC15.37■□□□□ 0.05
CDX1P47902 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
CDX1P47902 AC012618.2-201ENST00000428058 849 ntBASIC15.37■□□□□ 0.05
CDX1P47902 KRT16P5-201ENST00000455284 522 ntBASIC15.37■□□□□ 0.05
CDX1P47902 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CDX1P47902 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDX1P47902 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC15.37■□□□□ 0.05
CDX1P47902 RARRES2P10-201ENST00000564312 460 ntBASIC15.37■□□□□ 0.05
CDX1P47902 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC15.37■□□□□ 0.05
CDX1P47902 AC004264.1-201ENST00000608354 794 ntBASIC15.37■□□□□ 0.05
CDX1P47902 Six3os1_6.1-201ENST00000620790 196 ntBASIC15.37■□□□□ 0.05
CDX1P47902 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CDX1P47902 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
CDX1P47902 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDX1P47902 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC15.37■□□□□ 0.05
CDX1P47902 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CDX1P47902 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDX1P47902 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CDX1P47902 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CDX1P47902 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC15.37■□□□□ 0.05
CDX1P47902 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CDX1P47902 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC15.36■□□□□ 0.05
CDX1P47902 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CDX1P47902 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CDX1P47902 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC15.36■□□□□ 0.05
CDX1P47902 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC15.36■□□□□ 0.05
CDX1P47902 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC15.36■□□□□ 0.05
CDX1P47902 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDX1P47902 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDX1P47902 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDX1P47902 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC15.36■□□□□ 0.05
CDX1P47902 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC15.36■□□□□ 0.05
CDX1P47902 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CDX1P47902 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CDX1P47902 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDX1P47902 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC15.36■□□□□ 0.05
CDX1P47902 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CDX1P47902 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC15.36■□□□□ 0.05
CDX1P47902 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
CDX1P47902 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC15.36■□□□□ 0.05
CDX1P47902 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDX1P47902 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC15.36■□□□□ 0.05
CDX1P47902 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CDX1P47902 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
CDX1P47902 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
CDX1P47902 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CDX1P47902 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC15.36■□□□□ 0.05
CDX1P47902 EML3-216ENST00000529309 2909 ntTSL 2 BASIC15.36■□□□□ 0.05
CDX1P47902 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC15.36■□□□□ 0.05
CDX1P47902 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CDX1P47902 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CDX1P47902 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC15.35■□□□□ 0.05
CDX1P47902 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CDX1P47902 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
CDX1P47902 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CDX1P47902 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC15.35■□□□□ 0.05
CDX1P47902 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC15.35■□□□□ 0.05
CDX1P47902 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CDX1P47902 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CDX1P47902 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CDX1P47902 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC15.35■□□□□ 0.05
CDX1P47902 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
CDX1P47902 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
CDX1P47902 RPS2P55-201ENST00000397318 883 ntBASIC15.35■□□□□ 0.05
CDX1P47902 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms