Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHMT2P34897 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SHMT2P34897 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.46■□□□□ 0.55
SHMT2P34897 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHMT2P34897 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.46■□□□□ 0.55
SHMT2P34897 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHMT2P34897 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHMT2P34897 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHMT2P34897 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.46■□□□□ 0.55
SHMT2P34897 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHMT2P34897 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.46■□□□□ 0.55
SHMT2P34897 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHMT2P34897 AC211429.1-201ENST00000415277 523 ntBASIC18.46■□□□□ 0.55
SHMT2P34897 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHMT2P34897 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC18.46■□□□□ 0.55
SHMT2P34897 CCR12P-201ENST00000446203 998 ntBASIC18.46■□□□□ 0.55
SHMT2P34897 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.46■□□□□ 0.55
SHMT2P34897 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.46■□□□□ 0.55
SHMT2P34897 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
SHMT2P34897 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.46■□□□□ 0.55
SHMT2P34897 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.46■□□□□ 0.55
SHMT2P34897 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.46■□□□□ 0.55
SHMT2P34897 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHMT2P34897 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.46■□□□□ 0.55
SHMT2P34897 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.46■□□□□ 0.55
SHMT2P34897 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.46■□□□□ 0.55
SHMT2P34897 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.46■□□□□ 0.55
SHMT2P34897 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.54
SHMT2P34897 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.54
SHMT2P34897 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.46■□□□□ 0.54
SHMT2P34897 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.45■□□□□ 0.54
SHMT2P34897 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHMT2P34897 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHMT2P34897 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHMT2P34897 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHMT2P34897 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
SHMT2P34897 LINC01568-207ENST00000641790 1380 ntBASIC18.45■□□□□ 0.54
SHMT2P34897 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHMT2P34897 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHMT2P34897 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.45■□□□□ 0.54
SHMT2P34897 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHMT2P34897 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.45■□□□□ 0.54
SHMT2P34897 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHMT2P34897 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHMT2P34897 TSPY14P-201ENST00000303979 915 ntBASIC18.45■□□□□ 0.54
SHMT2P34897 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHMT2P34897 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.45■□□□□ 0.54
SHMT2P34897 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHMT2P34897 AC128688.1-201ENST00000487626 519 ntBASIC18.45■□□□□ 0.54
SHMT2P34897 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHMT2P34897 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC18.45■□□□□ 0.54
SHMT2P34897 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHMT2P34897 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.45■□□□□ 0.54
SHMT2P34897 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHMT2P34897 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SHMT2P34897 AC145285.6-201ENST00000604632 637 ntBASIC18.45■□□□□ 0.54
SHMT2P34897 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC18.45■□□□□ 0.54
SHMT2P34897 AC097493.4-201ENST00000641197 219 ntBASIC18.45■□□□□ 0.54
SHMT2P34897 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.45■□□□□ 0.54
SHMT2P34897 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHMT2P34897 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHMT2P34897 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
SHMT2P34897 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHMT2P34897 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.45■□□□□ 0.54
SHMT2P34897 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SHMT2P34897 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
SHMT2P34897 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
SHMT2P34897 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.45■□□□□ 0.54
SHMT2P34897 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
SHMT2P34897 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.44■□□□□ 0.54
SHMT2P34897 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHMT2P34897 TEX21P-204ENST00000641479 1693 ntBASIC18.44■□□□□ 0.54
SHMT2P34897 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.44■□□□□ 0.54
SHMT2P34897 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.44■□□□□ 0.54
SHMT2P34897 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.44■□□□□ 0.54
SHMT2P34897 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHMT2P34897 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHMT2P34897 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHMT2P34897 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SHMT2P34897 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SHMT2P34897 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHMT2P34897 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SHMT2P34897 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.44■□□□□ 0.54
SHMT2P34897 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.44■□□□□ 0.54
SHMT2P34897 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHMT2P34897 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.44■□□□□ 0.54
SHMT2P34897 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.44■□□□□ 0.54
SHMT2P34897 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.44■□□□□ 0.54
SHMT2P34897 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.44■□□□□ 0.54
SHMT2P34897 AC116562.4-202ENST00000641738 218 ntBASIC18.44■□□□□ 0.54
SHMT2P34897 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHMT2P34897 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHMT2P34897 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHMT2P34897 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHMT2P34897 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
SHMT2P34897 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SHMT2P34897 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.44■□□□□ 0.54
SHMT2P34897 AC141586.3-201ENST00000562166 1838 ntBASIC18.44■□□□□ 0.54
SHMT2P34897 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.44■□□□□ 0.54
SHMT2P34897 AL032819.2-201ENST00000624543 2162 ntBASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms