Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CDH3P22223 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CDH3P22223 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.46■□□□□ 0.55
CDH3P22223 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH3P22223 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH3P22223 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.46■□□□□ 0.55
CDH3P22223 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.46■□□□□ 0.54
CDH3P22223 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.46■□□□□ 0.54
CDH3P22223 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.46■□□□□ 0.54
CDH3P22223 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
CDH3P22223 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
CDH3P22223 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH3P22223 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH3P22223 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.45■□□□□ 0.54
CDH3P22223 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDH3P22223 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH3P22223 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.45■□□□□ 0.54
CDH3P22223 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.45■□□□□ 0.54
CDH3P22223 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.45■□□□□ 0.54
CDH3P22223 FAM210CP-201ENST00000445714 574 ntBASIC18.45■□□□□ 0.54
CDH3P22223 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.45■□□□□ 0.54
CDH3P22223 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.45■□□□□ 0.54
CDH3P22223 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.45■□□□□ 0.54
CDH3P22223 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.45■□□□□ 0.54
CDH3P22223 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.45■□□□□ 0.54
CDH3P22223 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH3P22223 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH3P22223 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.45■□□□□ 0.54
CDH3P22223 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH3P22223 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDH3P22223 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH3P22223 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
CDH3P22223 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDH3P22223 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.45■□□□□ 0.54
CDH3P22223 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH3P22223 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDH3P22223 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDH3P22223 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.45■□□□□ 0.54
CDH3P22223 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.45■□□□□ 0.54
CDH3P22223 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDH3P22223 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
CDH3P22223 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.45■□□□□ 0.54
CDH3P22223 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDH3P22223 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH3P22223 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
CDH3P22223 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH3P22223 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CDH3P22223 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.44■□□□□ 0.54
CDH3P22223 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.44■□□□□ 0.54
CDH3P22223 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH3P22223 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH3P22223 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH3P22223 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CDH3P22223 TSPY14P-201ENST00000303979 915 ntBASIC18.44■□□□□ 0.54
CDH3P22223 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH3P22223 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.44■□□□□ 0.54
CDH3P22223 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.44■□□□□ 0.54
CDH3P22223 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CDH3P22223 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.44■□□□□ 0.54
CDH3P22223 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.44■□□□□ 0.54
CDH3P22223 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CDH3P22223 AC007613.1-201ENST00000572811 2597 ntBASIC18.44■□□□□ 0.54
CDH3P22223 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
CDH3P22223 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH3P22223 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH3P22223 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
CDH3P22223 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
CDH3P22223 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.44■□□□□ 0.54
CDH3P22223 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDH3P22223 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
CDH3P22223 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.43■□□□□ 0.54
CDH3P22223 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDH3P22223 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.43■□□□□ 0.54
CDH3P22223 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CDH3P22223 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDH3P22223 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.43■□□□□ 0.54
CDH3P22223 CCR12P-201ENST00000446203 998 ntBASIC18.43■□□□□ 0.54
CDH3P22223 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.43■□□□□ 0.54
CDH3P22223 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.43■□□□□ 0.54
CDH3P22223 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.43■□□□□ 0.54
CDH3P22223 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
CDH3P22223 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.43■□□□□ 0.54
CDH3P22223 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
CDH3P22223 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDH3P22223 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.43■□□□□ 0.54
CDH3P22223 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDH3P22223 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDH3P22223 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CDH3P22223 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDH3P22223 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDH3P22223 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDH3P22223 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.42■□□□□ 0.54
CDH3P22223 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CDH3P22223 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDH3P22223 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.42■□□□□ 0.54
CDH3P22223 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDH3P22223 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDH3P22223 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CDH3P22223 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CDH3P22223 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms