Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.57■□□□□ 0.72
HMGA1P17096 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGA1P17096 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGA1P17096 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGA1P17096 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGA1P17096 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC19.57■□□□□ 0.72
HMGA1P17096 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.57■□□□□ 0.72
HMGA1P17096 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC19.57■□□□□ 0.72
HMGA1P17096 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC19.57■□□□□ 0.72
HMGA1P17096 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HMGA1P17096 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC19.57■□□□□ 0.72
HMGA1P17096 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC19.57■□□□□ 0.72
HMGA1P17096 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC19.57■□□□□ 0.72
HMGA1P17096 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC19.57■□□□□ 0.72
HMGA1P17096 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGA1P17096 AC068587.9-201ENST00000641814 219 ntBASIC19.57■□□□□ 0.72
HMGA1P17096 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGA1P17096 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
HMGA1P17096 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
HMGA1P17096 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGA1P17096 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGA1P17096 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGA1P17096 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HMGA1P17096 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.57■□□□□ 0.72
HMGA1P17096 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
HMGA1P17096 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGA1P17096 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.56■□□□□ 0.72
HMGA1P17096 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.56■□□□□ 0.72
HMGA1P17096 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.56■□□□□ 0.72
HMGA1P17096 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGA1P17096 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGA1P17096 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGA1P17096 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.56■□□□□ 0.72
HMGA1P17096 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HMGA1P17096 AL645929.1-201ENST00000420084 975 ntBASIC19.56■□□□□ 0.72
HMGA1P17096 HLA-F-220ENST00000434407 884 ntBASIC19.56■□□□□ 0.72
HMGA1P17096 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HMGA1P17096 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HMGA1P17096 KRT18P56-201ENST00000507275 550 ntBASIC19.56■□□□□ 0.72
HMGA1P17096 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HMGA1P17096 AC104390.1-201ENST00000555663 520 ntBASIC19.56■□□□□ 0.72
HMGA1P17096 AC069148.1-201ENST00000608741 768 ntBASIC19.56■□□□□ 0.72
HMGA1P17096 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGA1P17096 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
HMGA1P17096 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGA1P17096 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGA1P17096 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.56■□□□□ 0.72
HMGA1P17096 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGA1P17096 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HMGA1P17096 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HMGA1P17096 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HMGA1P17096 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
HMGA1P17096 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HMGA1P17096 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HMGA1P17096 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
HMGA1P17096 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HMGA1P17096 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HMGA1P17096 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC19.55■□□□□ 0.72
HMGA1P17096 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.55■□□□□ 0.72
HMGA1P17096 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
HMGA1P17096 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC19.55■□□□□ 0.72
HMGA1P17096 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
HMGA1P17096 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
HMGA1P17096 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HMGA1P17096 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HMGA1P17096 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.55■□□□□ 0.72
HMGA1P17096 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HMGA1P17096 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HMGA1P17096 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
HMGA1P17096 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HMGA1P17096 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
HMGA1P17096 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGA1P17096 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC19.54■□□□□ 0.72
HMGA1P17096 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HMGA1P17096 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HMGA1P17096 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
HMGA1P17096 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.54■□□□□ 0.72
HMGA1P17096 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGA1P17096 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGA1P17096 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGA1P17096 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC19.54■□□□□ 0.72
HMGA1P17096 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HMGA1P17096 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC19.54■□□□□ 0.72
HMGA1P17096 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
HMGA1P17096 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC19.54■□□□□ 0.72
HMGA1P17096 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC19.54■□□□□ 0.72
HMGA1P17096 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HMGA1P17096 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC19.54■□□□□ 0.72
HMGA1P17096 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.54■□□□□ 0.72
HMGA1P17096 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
HMGA1P17096 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGA1P17096 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC19.54■□□□□ 0.72
HMGA1P17096 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.54■□□□□ 0.72
HMGA1P17096 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.54■□□□□ 0.72
HMGA1P17096 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.54■□□□□ 0.72
HMGA1P17096 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HMGA1P17096 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGA1P17096 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGA1P17096 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGA1P17096 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms