Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
SEMA3DO95025 AL031598.1-201ENST00000561511 1773 ntBASIC18.07■□□□□ 0.48
SEMA3DO95025 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
SEMA3DO95025 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SEMA3DO95025 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SEMA3DO95025 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SEMA3DO95025 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
SEMA3DO95025 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.07■□□□□ 0.48
SEMA3DO95025 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.07■□□□□ 0.48
SEMA3DO95025 BAALC-201ENST00000297574 801 ntTSL 3 BASIC18.07■□□□□ 0.48
SEMA3DO95025 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SEMA3DO95025 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SEMA3DO95025 MESTP1-201ENST00000404287 994 ntBASIC18.07■□□□□ 0.48
SEMA3DO95025 AC008040.2-201ENST00000461049 708 ntBASIC18.07■□□□□ 0.48
SEMA3DO95025 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SEMA3DO95025 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SEMA3DO95025 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.07■□□□□ 0.48
SEMA3DO95025 CKBP1-201ENST00000565489 1086 ntBASIC18.07■□□□□ 0.48
SEMA3DO95025 AP000692.2-201ENST00000608391 879 ntBASIC18.07■□□□□ 0.48
SEMA3DO95025 DGCR10-201ENST00000609839 495 ntBASIC18.07■□□□□ 0.48
SEMA3DO95025 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.07■□□□□ 0.48
SEMA3DO95025 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SEMA3DO95025 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SEMA3DO95025 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.07■□□□□ 0.48
SEMA3DO95025 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.07■□□□□ 0.48
SEMA3DO95025 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SEMA3DO95025 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SEMA3DO95025 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
SEMA3DO95025 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SEMA3DO95025 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SEMA3DO95025 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SEMA3DO95025 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.07■□□□□ 0.48
SEMA3DO95025 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.07■□□□□ 0.48
SEMA3DO95025 Z98044.1-201ENST00000632503 1764 ntBASIC18.07■□□□□ 0.48
SEMA3DO95025 KRT8P3-201ENST00000519669 1449 ntBASIC18.06■□□□□ 0.48
SEMA3DO95025 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.06■□□□□ 0.48
SEMA3DO95025 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SEMA3DO95025 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
SEMA3DO95025 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SEMA3DO95025 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SEMA3DO95025 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SEMA3DO95025 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.06■□□□□ 0.48
SEMA3DO95025 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.06■□□□□ 0.48
SEMA3DO95025 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SEMA3DO95025 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
SEMA3DO95025 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.06■□□□□ 0.48
SEMA3DO95025 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.06■□□□□ 0.48
SEMA3DO95025 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SEMA3DO95025 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.06■□□□□ 0.48
SEMA3DO95025 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
SEMA3DO95025 AC120498.9-201ENST00000339021 3867 ntBASIC18.06■□□□□ 0.48
SEMA3DO95025 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SEMA3DO95025 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SEMA3DO95025 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.06■□□□□ 0.48
SEMA3DO95025 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SEMA3DO95025 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
SEMA3DO95025 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SEMA3DO95025 AC116562.2-201ENST00000507042 360 ntBASIC18.06■□□□□ 0.48
SEMA3DO95025 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.06■□□□□ 0.48
SEMA3DO95025 NUDT16P1-203ENST00000513809 620 ntBASIC18.06■□□□□ 0.48
SEMA3DO95025 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SEMA3DO95025 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
SEMA3DO95025 AL049637.2-201ENST00000641778 930 ntBASIC18.06■□□□□ 0.48
SEMA3DO95025 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
SEMA3DO95025 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SEMA3DO95025 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SEMA3DO95025 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SEMA3DO95025 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SEMA3DO95025 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
SEMA3DO95025 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.06■□□□□ 0.48
SEMA3DO95025 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
SEMA3DO95025 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
SEMA3DO95025 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SEMA3DO95025 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SEMA3DO95025 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SEMA3DO95025 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.05■□□□□ 0.48
SEMA3DO95025 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.05■□□□□ 0.48
SEMA3DO95025 MME-217ENST00000616757 1315 ntTSL 5 BASIC18.05■□□□□ 0.48
SEMA3DO95025 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SEMA3DO95025 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SEMA3DO95025 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SEMA3DO95025 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SEMA3DO95025 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.05■□□□□ 0.48
SEMA3DO95025 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SEMA3DO95025 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
SEMA3DO95025 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SEMA3DO95025 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SEMA3DO95025 AC113410.3-201ENST00000623366 203 ntBASIC18.05■□□□□ 0.48
SEMA3DO95025 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
SEMA3DO95025 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.05■□□□□ 0.48
SEMA3DO95025 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
SEMA3DO95025 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SEMA3DO95025 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SEMA3DO95025 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
SEMA3DO95025 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.05■□□□□ 0.48
SEMA3DO95025 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.05■□□□□ 0.48
SEMA3DO95025 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SEMA3DO95025 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SEMA3DO95025 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.04■□□□□ 0.48
SEMA3DO95025 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms