Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.75■□□□□ 0.43
LDB3O75112 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LDB3O75112 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LDB3O75112 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
LDB3O75112 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LDB3O75112 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LDB3O75112 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDB3O75112 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.74■□□□□ 0.43
LDB3O75112 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
LDB3O75112 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
LDB3O75112 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
LDB3O75112 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LDB3O75112 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
LDB3O75112 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDB3O75112 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LDB3O75112 INGX-201ENST00000359239 846 ntBASIC17.74■□□□□ 0.43
LDB3O75112 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.74■□□□□ 0.43
LDB3O75112 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDB3O75112 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.74■□□□□ 0.43
LDB3O75112 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDB3O75112 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
LDB3O75112 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDB3O75112 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.74■□□□□ 0.43
LDB3O75112 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDB3O75112 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDB3O75112 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
LDB3O75112 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
LDB3O75112 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDB3O75112 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDB3O75112 BX323043.1-201ENST00000641006 1765 ntBASIC17.74■□□□□ 0.43
LDB3O75112 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LDB3O75112 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.73■□□□□ 0.43
LDB3O75112 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
LDB3O75112 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LDB3O75112 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
LDB3O75112 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
LDB3O75112 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
LDB3O75112 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
LDB3O75112 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LDB3O75112 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LDB3O75112 TSPY14P-201ENST00000303979 915 ntBASIC17.73■□□□□ 0.43
LDB3O75112 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.73■□□□□ 0.43
LDB3O75112 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.73■□□□□ 0.43
LDB3O75112 SLC25A1P2-201ENST00000430693 912 ntBASIC17.73■□□□□ 0.43
LDB3O75112 CCR12P-201ENST00000446203 998 ntBASIC17.73■□□□□ 0.43
LDB3O75112 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.73■□□□□ 0.43
LDB3O75112 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.73■□□□□ 0.43
LDB3O75112 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.73■□□□□ 0.43
LDB3O75112 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.73■□□□□ 0.43
LDB3O75112 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
LDB3O75112 AL023803.3-201ENST00000615559 522 ntBASIC17.73■□□□□ 0.43
LDB3O75112 AC133561.5-201ENST00000635547 218 ntBASIC17.73■□□□□ 0.43
LDB3O75112 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LDB3O75112 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
LDB3O75112 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
LDB3O75112 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LDB3O75112 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LDB3O75112 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
LDB3O75112 AL512353.2-201ENST00000448759 1962 ntBASIC17.73■□□□□ 0.43
LDB3O75112 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LDB3O75112 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
LDB3O75112 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
LDB3O75112 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LDB3O75112 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.72■□□□□ 0.43
LDB3O75112 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LDB3O75112 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.72■□□□□ 0.43
LDB3O75112 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LDB3O75112 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.72■□□□□ 0.43
LDB3O75112 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LDB3O75112 LINC01568-207ENST00000641790 1380 ntBASIC17.72■□□□□ 0.43
LDB3O75112 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LDB3O75112 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LDB3O75112 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.72■□□□□ 0.43
LDB3O75112 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LDB3O75112 EGLN1P1-201ENST00000531623 762 ntBASIC17.72■□□□□ 0.43
LDB3O75112 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LDB3O75112 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LDB3O75112 AC116562.4-202ENST00000641738 218 ntBASIC17.72■□□□□ 0.43
LDB3O75112 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LDB3O75112 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
LDB3O75112 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LDB3O75112 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.72■□□□□ 0.43
LDB3O75112 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LDB3O75112 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
LDB3O75112 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LDB3O75112 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LDB3O75112 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LDB3O75112 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
LDB3O75112 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LDB3O75112 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.71■□□□□ 0.43
LDB3O75112 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
LDB3O75112 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LDB3O75112 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.71■□□□□ 0.43
LDB3O75112 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.71■□□□□ 0.43
LDB3O75112 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LDB3O75112 AC007663.1-201ENST00000438948 1240 ntBASIC17.71■□□□□ 0.43
LDB3O75112 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.71■□□□□ 0.43
LDB3O75112 TSPY17P-201ENST00000450329 467 ntBASIC17.71■□□□□ 0.43
LDB3O75112 ECEL1P2-202ENST00000465689 757 ntBASIC17.71■□□□□ 0.43
LDB3O75112 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms