Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CACNA1FO60840 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC23.74■■□□□ 1.39
CACNA1FO60840 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC23.74■■□□□ 1.39
CACNA1FO60840 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CACNA1FO60840 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CACNA1FO60840 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CACNA1FO60840 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
CACNA1FO60840 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CACNA1FO60840 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
CACNA1FO60840 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC23.74■■□□□ 1.39
CACNA1FO60840 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CACNA1FO60840 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CACNA1FO60840 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC23.74■■□□□ 1.39
CACNA1FO60840 AC139887.4-201ENST00000607877 719 ntBASIC23.74■■□□□ 1.39
CACNA1FO60840 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
CACNA1FO60840 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CACNA1FO60840 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC23.74■■□□□ 1.39
CACNA1FO60840 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
CACNA1FO60840 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CACNA1FO60840 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
CACNA1FO60840 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC23.73■■□□□ 1.39
CACNA1FO60840 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CACNA1FO60840 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CACNA1FO60840 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC23.73■■□□□ 1.39
CACNA1FO60840 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CACNA1FO60840 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CACNA1FO60840 AC034232.1-201ENST00000506026 1064 ntBASIC23.73■■□□□ 1.39
CACNA1FO60840 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC23.73■■□□□ 1.39
CACNA1FO60840 GCSHP2-201ENST00000560971 527 ntBASIC23.73■■□□□ 1.39
CACNA1FO60840 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC23.73■■□□□ 1.39
CACNA1FO60840 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
CACNA1FO60840 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
CACNA1FO60840 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CACNA1FO60840 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CACNA1FO60840 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
CACNA1FO60840 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CACNA1FO60840 KRT18P38-201ENST00000449496 1282 ntBASIC23.72■■□□□ 1.39
CACNA1FO60840 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC23.72■■□□□ 1.39
CACNA1FO60840 MIR3917-201ENST00000580971 93 ntBASIC23.72■■□□□ 1.39
CACNA1FO60840 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC23.72■■□□□ 1.39
CACNA1FO60840 AC010240.3-201ENST00000607688 395 ntBASIC23.72■■□□□ 1.39
CACNA1FO60840 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CACNA1FO60840 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
CACNA1FO60840 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CACNA1FO60840 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC23.72■■□□□ 1.39
CACNA1FO60840 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC23.72■■□□□ 1.39
CACNA1FO60840 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC23.72■■□□□ 1.39
CACNA1FO60840 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC23.72■■□□□ 1.39
CACNA1FO60840 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CACNA1FO60840 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CACNA1FO60840 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CACNA1FO60840 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CACNA1FO60840 AL031133.1-201ENST00000406807 723 ntBASIC23.72■■□□□ 1.39
CACNA1FO60840 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC23.72■■□□□ 1.39
CACNA1FO60840 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC23.72■■□□□ 1.39
CACNA1FO60840 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC23.71■■□□□ 1.39
CACNA1FO60840 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC23.71■■□□□ 1.39
CACNA1FO60840 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CACNA1FO60840 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CACNA1FO60840 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC23.71■■□□□ 1.39
CACNA1FO60840 AC005332.1-201ENST00000577698 1310 ntBASIC23.71■■□□□ 1.39
CACNA1FO60840 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CACNA1FO60840 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC23.71■■□□□ 1.39
CACNA1FO60840 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC23.71■■□□□ 1.39
CACNA1FO60840 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
CACNA1FO60840 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CACNA1FO60840 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC23.71■■□□□ 1.39
CACNA1FO60840 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CACNA1FO60840 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC23.71■■□□□ 1.39
CACNA1FO60840 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC23.71■■□□□ 1.39
CACNA1FO60840 HYMAI.1-201ENST00000620949 238 ntBASIC23.71■■□□□ 1.39
CACNA1FO60840 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CACNA1FO60840 WDR6-223ENST00000627177 207 ntTSL 2 BASIC23.71■■□□□ 1.39
CACNA1FO60840 AL157888.1-201ENST00000631930 593 ntBASIC23.71■■□□□ 1.39
CACNA1FO60840 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
CACNA1FO60840 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
CACNA1FO60840 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
CACNA1FO60840 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC23.7■■□□□ 1.38
CACNA1FO60840 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC23.7■■□□□ 1.38
CACNA1FO60840 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CACNA1FO60840 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
CACNA1FO60840 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
CACNA1FO60840 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
CACNA1FO60840 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CACNA1FO60840 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CACNA1FO60840 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
CACNA1FO60840 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CACNA1FO60840 SAPCD2P2-201ENST00000431719 1174 ntBASIC23.7■■□□□ 1.38
CACNA1FO60840 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC23.7■■□□□ 1.38
CACNA1FO60840 RASA4DP-201ENST00000460726 1199 ntBASIC23.7■■□□□ 1.38
CACNA1FO60840 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
CACNA1FO60840 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC23.7■■□□□ 1.38
CACNA1FO60840 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC23.7■■□□□ 1.38
CACNA1FO60840 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC23.7■■□□□ 1.38
CACNA1FO60840 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC23.7■■□□□ 1.38
CACNA1FO60840 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC23.7■■□□□ 1.38
CACNA1FO60840 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CACNA1FO60840 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
CACNA1FO60840 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
CACNA1FO60840 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC23.69■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms