Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH4O15457 HEIH-201ENST00000623091 1652 ntBASIC21.18■□□□□ 0.98
MSH4O15457 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
MSH4O15457 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC21.18■□□□□ 0.98
MSH4O15457 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH4O15457 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH4O15457 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
MSH4O15457 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC21.18■□□□□ 0.98
MSH4O15457 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH4O15457 COX11P1-201ENST00000489116 835 ntBASIC21.18■□□□□ 0.98
MSH4O15457 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC21.18■□□□□ 0.98
MSH4O15457 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH4O15457 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH4O15457 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH4O15457 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC21.18■□□□□ 0.98
MSH4O15457 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MSH4O15457 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH4O15457 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
MSH4O15457 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC21.18■□□□□ 0.98
MSH4O15457 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH4O15457 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH4O15457 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH4O15457 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MSH4O15457 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MSH4O15457 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC21.18■□□□□ 0.98
MSH4O15457 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MSH4O15457 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
MSH4O15457 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH4O15457 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC21.17■□□□□ 0.98
MSH4O15457 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MSH4O15457 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH4O15457 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
MSH4O15457 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH4O15457 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH4O15457 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH4O15457 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH4O15457 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH4O15457 YBX1P2-201ENST00000489612 999 ntBASIC21.17■□□□□ 0.98
MSH4O15457 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC21.17■□□□□ 0.98
MSH4O15457 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC21.17■□□□□ 0.98
MSH4O15457 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC21.17■□□□□ 0.98
MSH4O15457 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH4O15457 AC011558.1-201ENST00000623459 338 ntBASIC21.17■□□□□ 0.98
MSH4O15457 AL023973.1-201ENST00000624619 620 ntBASIC21.17■□□□□ 0.98
MSH4O15457 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH4O15457 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MSH4O15457 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH4O15457 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC21.17■□□□□ 0.98
MSH4O15457 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC21.17■□□□□ 0.98
MSH4O15457 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC21.17■□□□□ 0.98
MSH4O15457 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC21.17■□□□□ 0.98
MSH4O15457 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH4O15457 AC006333.2-201ENST00000607957 2099 ntBASIC21.17■□□□□ 0.98
MSH4O15457 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC21.17■□□□□ 0.98
MSH4O15457 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH4O15457 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH4O15457 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH4O15457 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC21.16■□□□□ 0.98
MSH4O15457 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC21.16■□□□□ 0.98
MSH4O15457 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MSH4O15457 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH4O15457 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH4O15457 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH4O15457 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MSH4O15457 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH4O15457 ENSA-205ENST00000361532 792 ntTSL 2 BASIC21.16■□□□□ 0.98
MSH4O15457 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MSH4O15457 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MSH4O15457 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH4O15457 DUX4L26-201ENST00000489078 1255 ntBASIC21.16■□□□□ 0.98
MSH4O15457 AC083906.6-201ENST00000641366 219 ntBASIC21.16■□□□□ 0.98
MSH4O15457 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
MSH4O15457 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
MSH4O15457 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
MSH4O15457 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
MSH4O15457 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
MSH4O15457 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
MSH4O15457 NFYC-AS1-201ENST00000606277 1687 ntBASIC21.15■□□□□ 0.98
MSH4O15457 MTMR9LP-203ENST00000426597 1545 ntBASIC21.15■□□□□ 0.98
MSH4O15457 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
MSH4O15457 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH4O15457 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
MSH4O15457 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH4O15457 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH4O15457 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC21.15■□□□□ 0.98
MSH4O15457 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
MSH4O15457 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH4O15457 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC21.15■□□□□ 0.98
MSH4O15457 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH4O15457 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH4O15457 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
MSH4O15457 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
MSH4O15457 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
MSH4O15457 AK4P3-201ENST00000418260 669 ntBASIC21.15■□□□□ 0.98
MSH4O15457 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC21.15■□□□□ 0.98
MSH4O15457 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC21.15■□□□□ 0.98
MSH4O15457 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC21.15■□□□□ 0.98
MSH4O15457 NEK4P2-201ENST00000580004 1012 ntBASIC21.15■□□□□ 0.98
MSH4O15457 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
MSH4O15457 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms