Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
UBFD1O14562 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.33■□□□□ 0.52
UBFD1O14562 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
UBFD1O14562 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
UBFD1O14562 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
UBFD1O14562 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.33■□□□□ 0.52
UBFD1O14562 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.33■□□□□ 0.52
UBFD1O14562 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.33■□□□□ 0.52
UBFD1O14562 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.33■□□□□ 0.52
UBFD1O14562 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.33■□□□□ 0.52
UBFD1O14562 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
UBFD1O14562 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
UBFD1O14562 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
UBFD1O14562 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
UBFD1O14562 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
UBFD1O14562 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
UBFD1O14562 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
UBFD1O14562 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
UBFD1O14562 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.33■□□□□ 0.52
UBFD1O14562 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
UBFD1O14562 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.33■□□□□ 0.52
UBFD1O14562 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
UBFD1O14562 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
UBFD1O14562 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
UBFD1O14562 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBFD1O14562 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
UBFD1O14562 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
UBFD1O14562 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBFD1O14562 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
UBFD1O14562 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.32■□□□□ 0.52
UBFD1O14562 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBFD1O14562 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBFD1O14562 AC239809.2-201ENST00000415381 517 ntBASIC18.32■□□□□ 0.52
UBFD1O14562 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
UBFD1O14562 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.32■□□□□ 0.52
UBFD1O14562 AC124016.1-201ENST00000609552 612 ntBASIC18.32■□□□□ 0.52
UBFD1O14562 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBFD1O14562 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBFD1O14562 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.32■□□□□ 0.52
UBFD1O14562 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
UBFD1O14562 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.32■□□□□ 0.52
UBFD1O14562 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
UBFD1O14562 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
UBFD1O14562 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
UBFD1O14562 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
UBFD1O14562 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.31■□□□□ 0.52
UBFD1O14562 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBFD1O14562 NOC2LP2-201ENST00000407594 1944 ntBASIC18.31■□□□□ 0.52
UBFD1O14562 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
UBFD1O14562 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
UBFD1O14562 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBFD1O14562 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBFD1O14562 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBFD1O14562 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBFD1O14562 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.31■□□□□ 0.52
UBFD1O14562 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.31■□□□□ 0.52
UBFD1O14562 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.31■□□□□ 0.52
UBFD1O14562 AL445675.2-201ENST00000620291 557 ntBASIC18.31■□□□□ 0.52
UBFD1O14562 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBFD1O14562 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBFD1O14562 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBFD1O14562 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.31■□□□□ 0.52
UBFD1O14562 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.31■□□□□ 0.52
UBFD1O14562 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBFD1O14562 ABALON-201ENST00000629058 1903 ntBASIC18.31■□□□□ 0.52
UBFD1O14562 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
UBFD1O14562 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBFD1O14562 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
UBFD1O14562 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBFD1O14562 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
UBFD1O14562 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.3■□□□□ 0.52
UBFD1O14562 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
UBFD1O14562 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
UBFD1O14562 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.3■□□□□ 0.52
UBFD1O14562 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
UBFD1O14562 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
UBFD1O14562 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
UBFD1O14562 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
UBFD1O14562 AC004980.1-204ENST00000429707 299 ntBASIC18.3■□□□□ 0.52
UBFD1O14562 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.3■□□□□ 0.52
UBFD1O14562 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
UBFD1O14562 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
UBFD1O14562 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.3■□□□□ 0.52
UBFD1O14562 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
UBFD1O14562 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.3■□□□□ 0.52
UBFD1O14562 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.3■□□□□ 0.52
UBFD1O14562 AC068880.1-201ENST00000507289 2297 ntBASIC18.3■□□□□ 0.52
UBFD1O14562 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
UBFD1O14562 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
UBFD1O14562 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
UBFD1O14562 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
UBFD1O14562 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
UBFD1O14562 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.29■□□□□ 0.52
UBFD1O14562 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
UBFD1O14562 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
UBFD1O14562 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
UBFD1O14562 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
UBFD1O14562 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.29■□□□□ 0.52
UBFD1O14562 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
UBFD1O14562 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms