Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
PDLIM1O00151 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.96■□□□□ 0.47
PDLIM1O00151 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PDLIM1O00151 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.96■□□□□ 0.46
PDLIM1O00151 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM1O00151 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.95■□□□□ 0.46
PDLIM1O00151 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM1O00151 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC17.95■□□□□ 0.46
PDLIM1O00151 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
PDLIM1O00151 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM1O00151 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.95■□□□□ 0.46
PDLIM1O00151 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.95■□□□□ 0.46
PDLIM1O00151 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
PDLIM1O00151 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
PDLIM1O00151 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM1O00151 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM1O00151 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
PDLIM1O00151 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
PDLIM1O00151 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM1O00151 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM1O00151 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
PDLIM1O00151 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM1O00151 DUSP5P2-201ENST00000426873 1033 ntBASIC17.95■□□□□ 0.46
PDLIM1O00151 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC17.95■□□□□ 0.46
PDLIM1O00151 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
PDLIM1O00151 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC17.95■□□□□ 0.46
PDLIM1O00151 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC17.95■□□□□ 0.46
PDLIM1O00151 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.95■□□□□ 0.46
PDLIM1O00151 KLF13-207ENST00000560473 489 ntTSL 3 BASIC17.95■□□□□ 0.46
PDLIM1O00151 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.95■□□□□ 0.46
PDLIM1O00151 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.95■□□□□ 0.46
PDLIM1O00151 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.95■□□□□ 0.46
PDLIM1O00151 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM1O00151 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM1O00151 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM1O00151 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM1O00151 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM1O00151 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM1O00151 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM1O00151 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM1O00151 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM1O00151 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
PDLIM1O00151 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC17.94■□□□□ 0.46
PDLIM1O00151 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.94■□□□□ 0.46
PDLIM1O00151 AC090340.1-201ENST00000620778 4980 ntBASIC17.94■□□□□ 0.46
PDLIM1O00151 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM1O00151 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.94■□□□□ 0.46
PDLIM1O00151 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.94■□□□□ 0.46
PDLIM1O00151 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
PDLIM1O00151 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC17.94■□□□□ 0.46
PDLIM1O00151 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC17.94■□□□□ 0.46
PDLIM1O00151 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM1O00151 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM1O00151 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM1O00151 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM1O00151 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM1O00151 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM1O00151 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.94■□□□□ 0.46
PDLIM1O00151 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM1O00151 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM1O00151 ZNF815P-204ENST00000434898 1737 ntBASIC17.94■□□□□ 0.46
PDLIM1O00151 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM1O00151 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM1O00151 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.94■□□□□ 0.46
PDLIM1O00151 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM1O00151 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM1O00151 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM1O00151 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM1O00151 PCDHA12-202ENST00000613593 2588 ntBASIC17.93■□□□□ 0.46
PDLIM1O00151 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM1O00151 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM1O00151 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM1O00151 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
PDLIM1O00151 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM1O00151 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.93■□□□□ 0.46
PDLIM1O00151 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM1O00151 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM1O00151 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM1O00151 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM1O00151 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM1O00151 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.93■□□□□ 0.46
PDLIM1O00151 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM1O00151 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM1O00151 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM1O00151 RHEB-204ENST00000472642 900 ntTSL 3 BASIC17.93■□□□□ 0.46
PDLIM1O00151 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC17.93■□□□□ 0.46
PDLIM1O00151 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC17.93■□□□□ 0.46
PDLIM1O00151 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC17.93■□□□□ 0.46
PDLIM1O00151 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM1O00151 AL162727.3-201ENST00000635661 2787 ntBASIC17.93■□□□□ 0.46
PDLIM1O00151 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM1O00151 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
PDLIM1O00151 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM1O00151 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM1O00151 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
PDLIM1O00151 IRX1P1-201ENST00000438849 1838 ntBASIC17.93■□□□□ 0.46
PDLIM1O00151 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.93■□□□□ 0.46
PDLIM1O00151 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM1O00151 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM1O00151 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms