Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC15.37■□□□□ 0.05
TRAV40A0A0B4J280 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC15.37■□□□□ 0.05
TRAV40A0A0B4J280 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV40A0A0B4J280 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV40A0A0B4J280 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV40A0A0B4J280 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV40A0A0B4J280 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC15.37■□□□□ 0.05
TRAV40A0A0B4J280 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
TRAV40A0A0B4J280 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 UPK3BP1-201ENST00000428678 509 ntBASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 ISCU-203ENST00000431221 799 ntTSL 2 BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 KRT18P38-201ENST00000449496 1282 ntBASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 GCSHP2-201ENST00000560971 527 ntBASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 AL158211.5-201ENST00000623583 2518 ntBASIC15.36■□□□□ 0.05
TRAV40A0A0B4J280 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 GAD2-202ENST00000376248 680 ntTSL 5 BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 AL023284.2-201ENST00000405850 579 ntBASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 AC112907.2-201ENST00000448639 330 ntBASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 AL121956.5-201ENST00000625261 221 ntBASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV40A0A0B4J280 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 SNX5-210ENST00000481323 562 ntTSL 3 BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 MIR3180-5-201ENST00000583743 153 ntBASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms