Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
LIME1Q9H400 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.58■□□□□ 0.24
LIME1Q9H400 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIME1Q9H400 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIME1Q9H400 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.58■□□□□ 0.24
LIME1Q9H400 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
LIME1Q9H400 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIME1Q9H400 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC16.58■□□□□ 0.24
LIME1Q9H400 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIME1Q9H400 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LIME1Q9H400 TP73-202ENST00000354437 2140 ntTSL 5 BASIC16.58■□□□□ 0.24
LIME1Q9H400 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC16.58■□□□□ 0.24
LIME1Q9H400 AC093503.3-201ENST00000624917 2352 ntBASIC16.58■□□□□ 0.24
LIME1Q9H400 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC16.58■□□□□ 0.24
LIME1Q9H400 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIME1Q9H400 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.58■□□□□ 0.24
LIME1Q9H400 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LIME1Q9H400 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIME1Q9H400 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIME1Q9H400 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIME1Q9H400 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIME1Q9H400 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIME1Q9H400 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
LIME1Q9H400 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC16.57■□□□□ 0.24
LIME1Q9H400 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIME1Q9H400 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC16.57■□□□□ 0.24
LIME1Q9H400 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC16.57■□□□□ 0.24
LIME1Q9H400 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
LIME1Q9H400 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIME1Q9H400 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIME1Q9H400 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LIME1Q9H400 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC16.57■□□□□ 0.24
LIME1Q9H400 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIME1Q9H400 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC16.57■□□□□ 0.24
LIME1Q9H400 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIME1Q9H400 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIME1Q9H400 PHGDH-210ENST00000641115 1638 ntBASIC16.57■□□□□ 0.24
LIME1Q9H400 AC009237.14-201ENST00000609975 1594 ntBASIC16.57■□□□□ 0.24
LIME1Q9H400 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIME1Q9H400 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LIME1Q9H400 DERL1-203ENST00000419562 918 ntTSL 2 BASIC16.57■□□□□ 0.24
LIME1Q9H400 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
LIME1Q9H400 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.57■□□□□ 0.24
LIME1Q9H400 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIME1Q9H400 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC16.57■□□□□ 0.24
LIME1Q9H400 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
LIME1Q9H400 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LIME1Q9H400 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIME1Q9H400 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIME1Q9H400 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIME1Q9H400 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIME1Q9H400 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC16.57■□□□□ 0.24
LIME1Q9H400 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
LIME1Q9H400 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIME1Q9H400 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIME1Q9H400 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIME1Q9H400 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC16.56■□□□□ 0.24
LIME1Q9H400 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.56■□□□□ 0.24
LIME1Q9H400 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LIME1Q9H400 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LIME1Q9H400 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LIME1Q9H400 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.56■□□□□ 0.24
LIME1Q9H400 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LIME1Q9H400 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIME1Q9H400 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIME1Q9H400 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIME1Q9H400 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIME1Q9H400 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.56■□□□□ 0.24
LIME1Q9H400 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.56■□□□□ 0.24
LIME1Q9H400 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC16.56■□□□□ 0.24
LIME1Q9H400 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC16.56■□□□□ 0.24
LIME1Q9H400 VENTXP5-201ENST00000523979 775 ntBASIC16.56■□□□□ 0.24
LIME1Q9H400 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.56■□□□□ 0.24
LIME1Q9H400 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC16.56■□□□□ 0.24
LIME1Q9H400 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.56■□□□□ 0.24
LIME1Q9H400 IRF5-214ENST00000613821 595 ntTSL 5 BASIC16.56■□□□□ 0.24
LIME1Q9H400 DFFB-212ENST00000625756 649 ntTSL 5 BASIC16.56■□□□□ 0.24
LIME1Q9H400 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC16.56■□□□□ 0.24
LIME1Q9H400 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LIME1Q9H400 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC16.56■□□□□ 0.24
LIME1Q9H400 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIME1Q9H400 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LIME1Q9H400 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIME1Q9H400 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LIME1Q9H400 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC16.56■□□□□ 0.24
LIME1Q9H400 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
LIME1Q9H400 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
LIME1Q9H400 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIME1Q9H400 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
LIME1Q9H400 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LIME1Q9H400 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC16.55■□□□□ 0.24
LIME1Q9H400 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIME1Q9H400 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.55■□□□□ 0.24
LIME1Q9H400 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIME1Q9H400 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIME1Q9H400 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC16.55■□□□□ 0.24
LIME1Q9H400 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
LIME1Q9H400 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LIME1Q9H400 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC16.55■□□□□ 0.24
LIME1Q9H400 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms