Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
MMP28Q9H239 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC16.66■□□□□ 0.26
MMP28Q9H239 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC16.66■□□□□ 0.26
MMP28Q9H239 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MMP28Q9H239 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MMP28Q9H239 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MMP28Q9H239 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MMP28Q9H239 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MMP28Q9H239 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
MMP28Q9H239 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MMP28Q9H239 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
MMP28Q9H239 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MMP28Q9H239 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MMP28Q9H239 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MMP28Q9H239 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
MMP28Q9H239 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MMP28Q9H239 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC16.65■□□□□ 0.26
MMP28Q9H239 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
MMP28Q9H239 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
MMP28Q9H239 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MMP28Q9H239 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.65■□□□□ 0.26
MMP28Q9H239 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC16.65■□□□□ 0.26
MMP28Q9H239 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC16.65■□□□□ 0.26
MMP28Q9H239 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
MMP28Q9H239 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC16.65■□□□□ 0.26
MMP28Q9H239 AC126763.1-201ENST00000552015 2118 ntBASIC16.65■□□□□ 0.26
MMP28Q9H239 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC16.65■□□□□ 0.26
MMP28Q9H239 AC100791.3-201ENST00000617619 330 ntBASIC16.65■□□□□ 0.26
MMP28Q9H239 OR10C1-204ENST00000622521 1039 ntBASIC16.65■□□□□ 0.26
MMP28Q9H239 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC16.65■□□□□ 0.26
MMP28Q9H239 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC16.65■□□□□ 0.26
MMP28Q9H239 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
MMP28Q9H239 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
MMP28Q9H239 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MMP28Q9H239 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
MMP28Q9H239 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MMP28Q9H239 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MMP28Q9H239 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
MMP28Q9H239 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
MMP28Q9H239 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
MMP28Q9H239 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
MMP28Q9H239 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
MMP28Q9H239 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
MMP28Q9H239 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC16.64■□□□□ 0.26
MMP28Q9H239 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
MMP28Q9H239 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
MMP28Q9H239 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
MMP28Q9H239 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.26
MMP28Q9H239 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MMP28Q9H239 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
MMP28Q9H239 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MMP28Q9H239 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
MMP28Q9H239 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MMP28Q9H239 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MMP28Q9H239 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
MMP28Q9H239 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
MMP28Q9H239 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC16.64■□□□□ 0.25
MMP28Q9H239 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
MMP28Q9H239 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC16.64■□□□□ 0.25
MMP28Q9H239 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.64■□□□□ 0.25
MMP28Q9H239 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
MMP28Q9H239 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
MMP28Q9H239 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
MMP28Q9H239 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC16.64■□□□□ 0.25
MMP28Q9H239 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MMP28Q9H239 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC16.64■□□□□ 0.25
MMP28Q9H239 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
MMP28Q9H239 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MMP28Q9H239 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MMP28Q9H239 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MMP28Q9H239 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
MMP28Q9H239 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MMP28Q9H239 BCL2-203ENST00000589955 5011 ntBASIC16.63■□□□□ 0.25
MMP28Q9H239 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
MMP28Q9H239 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MMP28Q9H239 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MMP28Q9H239 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MMP28Q9H239 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MMP28Q9H239 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC16.63■□□□□ 0.25
MMP28Q9H239 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
MMP28Q9H239 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MMP28Q9H239 CYP21A1P-202ENST00000354927 1481 ntBASIC16.63■□□□□ 0.25
MMP28Q9H239 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MMP28Q9H239 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MMP28Q9H239 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.63■□□□□ 0.25
MMP28Q9H239 AC080080.1-201ENST00000625121 2420 ntBASIC16.63■□□□□ 0.25
MMP28Q9H239 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC16.63■□□□□ 0.25
MMP28Q9H239 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MMP28Q9H239 GPX1P1-201ENST00000388829 606 ntBASIC16.63■□□□□ 0.25
MMP28Q9H239 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MMP28Q9H239 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MMP28Q9H239 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MMP28Q9H239 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MMP28Q9H239 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
MMP28Q9H239 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
MMP28Q9H239 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MMP28Q9H239 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
MMP28Q9H239 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MMP28Q9H239 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
MMP28Q9H239 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms