Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC22.38■■□□□ 1.17
NKX2-3Q8TAU0 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
NKX2-3Q8TAU0 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
NKX2-3Q8TAU0 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC22.38■■□□□ 1.17
NKX2-3Q8TAU0 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC22.38■■□□□ 1.17
NKX2-3Q8TAU0 COX11P1-201ENST00000489116 835 ntBASIC22.38■■□□□ 1.17
NKX2-3Q8TAU0 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
NKX2-3Q8TAU0 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
NKX2-3Q8TAU0 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
NKX2-3Q8TAU0 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
NKX2-3Q8TAU0 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC22.37■■□□□ 1.17
NKX2-3Q8TAU0 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC22.37■■□□□ 1.17
NKX2-3Q8TAU0 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
NKX2-3Q8TAU0 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC22.37■■□□□ 1.17
NKX2-3Q8TAU0 HCG4P8-203ENST00000443049 980 ntBASIC22.37■■□□□ 1.17
NKX2-3Q8TAU0 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC22.37■■□□□ 1.17
NKX2-3Q8TAU0 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC22.37■■□□□ 1.17
NKX2-3Q8TAU0 CLN6-214ENST00000636314 442 ntTSL 3 BASIC22.37■■□□□ 1.17
NKX2-3Q8TAU0 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
NKX2-3Q8TAU0 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC22.37■■□□□ 1.17
NKX2-3Q8TAU0 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
NKX2-3Q8TAU0 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
NKX2-3Q8TAU0 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC22.37■■□□□ 1.17
NKX2-3Q8TAU0 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
NKX2-3Q8TAU0 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
NKX2-3Q8TAU0 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
NKX2-3Q8TAU0 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
NKX2-3Q8TAU0 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
NKX2-3Q8TAU0 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC22.36■■□□□ 1.17
NKX2-3Q8TAU0 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
NKX2-3Q8TAU0 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
NKX2-3Q8TAU0 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
NKX2-3Q8TAU0 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC22.36■■□□□ 1.17
NKX2-3Q8TAU0 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
NKX2-3Q8TAU0 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
NKX2-3Q8TAU0 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC22.36■■□□□ 1.17
NKX2-3Q8TAU0 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC22.36■■□□□ 1.17
NKX2-3Q8TAU0 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC22.36■■□□□ 1.17
NKX2-3Q8TAU0 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC22.36■■□□□ 1.17
NKX2-3Q8TAU0 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
NKX2-3Q8TAU0 AC116562.4-202ENST00000641738 218 ntBASIC22.36■■□□□ 1.17
NKX2-3Q8TAU0 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
NKX2-3Q8TAU0 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC22.36■■□□□ 1.17
NKX2-3Q8TAU0 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC22.36■■□□□ 1.17
NKX2-3Q8TAU0 AC087289.5-201ENST00000586076 3175 ntBASIC22.36■■□□□ 1.17
NKX2-3Q8TAU0 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
NKX2-3Q8TAU0 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
NKX2-3Q8TAU0 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC22.35■■□□□ 1.17
NKX2-3Q8TAU0 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
NKX2-3Q8TAU0 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
NKX2-3Q8TAU0 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
NKX2-3Q8TAU0 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC22.35■■□□□ 1.17
NKX2-3Q8TAU0 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC22.35■■□□□ 1.17
NKX2-3Q8TAU0 AP003041.3-201ENST00000527151 707 ntBASIC22.35■■□□□ 1.17
NKX2-3Q8TAU0 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC22.35■■□□□ 1.17
NKX2-3Q8TAU0 CYGB-204ENST00000589342 815 ntTSL 3 BASIC22.35■■□□□ 1.17
NKX2-3Q8TAU0 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
NKX2-3Q8TAU0 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
NKX2-3Q8TAU0 AP000974.1-201ENST00000623909 2387 ntBASIC22.35■■□□□ 1.17
NKX2-3Q8TAU0 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
NKX2-3Q8TAU0 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
NKX2-3Q8TAU0 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
NKX2-3Q8TAU0 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
NKX2-3Q8TAU0 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
NKX2-3Q8TAU0 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 GPAT2P1-201ENST00000444924 1672 ntBASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 AL353719.1-201ENST00000566847 864 ntBASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 CLEC4GP1-201ENST00000596555 870 ntBASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC22.34■■□□□ 1.17
NKX2-3Q8TAU0 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
NKX2-3Q8TAU0 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC22.33■■□□□ 1.17
NKX2-3Q8TAU0 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
NKX2-3Q8TAU0 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
NKX2-3Q8TAU0 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
NKX2-3Q8TAU0 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC22.33■■□□□ 1.17
NKX2-3Q8TAU0 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC22.33■■□□□ 1.17
NKX2-3Q8TAU0 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC22.33■■□□□ 1.17
NKX2-3Q8TAU0 HOMER2P1-201ENST00000455653 964 ntBASIC22.33■■□□□ 1.17
NKX2-3Q8TAU0 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC22.33■■□□□ 1.17
NKX2-3Q8TAU0 AL031432.5-201ENST00000641059 760 ntBASIC22.33■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms