Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 BX005040.4-201ENST00000637145 1518 ntBASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 AC011484.1-201ENST00000377652 1995 ntBASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
CCDC28AQ8IWP9 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 EXOC3-AS1-202ENST00000623673 1663 ntBASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 AC005052.1-201ENST00000625181 2492 ntBASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 HYMAI-201ENST00000635591 3347 ntBASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC28AQ8IWP9 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 OR6D1P-203ENST00000641209 4860 ntBASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 UNC93B3-201ENST00000308076 687 ntBASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 PTMA-205ENST00000410064 814 ntTSL 2 BASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 AP005435.1-201ENST00000529293 1178 ntBASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms