Protein–RNA interactions for Protein: Q5XG99

LYSMD4, LysM and putative peptidoglycan-binding domain-containing protein 4, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4Q5XG99 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
LYSMD4Q5XG99 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LYSMD4Q5XG99 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
LYSMD4Q5XG99 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LYSMD4Q5XG99 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.53■□□□□ 0.56
LYSMD4Q5XG99 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.53■□□□□ 0.56
LYSMD4Q5XG99 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LYSMD4Q5XG99 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.52■□□□□ 0.56
LYSMD4Q5XG99 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
LYSMD4Q5XG99 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LYSMD4Q5XG99 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LYSMD4Q5XG99 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.52■□□□□ 0.56
LYSMD4Q5XG99 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LYSMD4Q5XG99 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LYSMD4Q5XG99 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LYSMD4Q5XG99 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LYSMD4Q5XG99 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LYSMD4Q5XG99 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LYSMD4Q5XG99 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.52■□□□□ 0.56
LYSMD4Q5XG99 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.52■□□□□ 0.56
LYSMD4Q5XG99 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.52■□□□□ 0.56
LYSMD4Q5XG99 AC104390.1-201ENST00000555663 520 ntBASIC18.52■□□□□ 0.56
LYSMD4Q5XG99 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.52■□□□□ 0.56
LYSMD4Q5XG99 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
LYSMD4Q5XG99 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LYSMD4Q5XG99 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
LYSMD4Q5XG99 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
LYSMD4Q5XG99 AL109659.2-201ENST00000606809 1674 ntBASIC18.52■□□□□ 0.56
LYSMD4Q5XG99 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
LYSMD4Q5XG99 RCC2P3-201ENST00000418112 1537 ntBASIC18.52■□□□□ 0.56
LYSMD4Q5XG99 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
LYSMD4Q5XG99 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
LYSMD4Q5XG99 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.52■□□□□ 0.55
LYSMD4Q5XG99 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LYSMD4Q5XG99 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 AC079776.4-201ENST00000511039 504 ntBASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 AP002469.2-201ENST00000531724 424 ntBASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 AL662844.1-201ENST00000546340 181 ntBASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LYSMD4Q5XG99 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 HOXB1-202ENST00000577092 1414 ntBASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 Z69720.1-201ENST00000601483 472 ntBASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 AL390719.2-201ENST00000606993 987 ntBASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.5■□□□□ 0.55
LYSMD4Q5XG99 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LYSMD4Q5XG99 LINC00167-201ENST00000530583 1419 ntBASIC18.49■□□□□ 0.55
LYSMD4Q5XG99 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LYSMD4Q5XG99 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms