Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PDLIM3Q53GG5 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 SOX15-203ENST00000570788 1093 ntBASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 AC141586.3-201ENST00000562166 1838 ntBASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 NXN-202ENST00000537628 1340 ntTSL 3 BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 AC018553.1-201ENST00000616682 1458 ntBASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC15.65■□□□□ 0.1
PDLIM3Q53GG5 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 MMP23A-201ENST00000234610 1017 ntBASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 OR2A1-AS1-207ENST00000486094 819 ntBASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 TK2-204ENST00000525974 1178 ntTSL 2 BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 AC087388.1-201ENST00000571370 1112 ntBASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 P4HB-223ENST00000576390 439 ntTSL 4 BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC15.64■□□□□ 0.09
PDLIM3Q53GG5 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms