Protein–RNA interactions for Protein: P78556

CCL20, C-C motif chemokine 20, humanhuman

Predictions only

Length 96 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL20P78556 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCL20P78556 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCL20P78556 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
CCL20P78556 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC14.9□□□□□ -0.02
CCL20P78556 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCL20P78556 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCL20P78556 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCL20P78556 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCL20P78556 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
CCL20P78556 AC019069.1-201ENST00000610008 1333 ntBASIC14.9□□□□□ -0.02
CCL20P78556 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCL20P78556 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCL20P78556 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCL20P78556 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCL20P78556 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCL20P78556 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCL20P78556 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
CCL20P78556 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCL20P78556 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCL20P78556 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
CCL20P78556 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCL20P78556 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC14.89□□□□□ -0.03
CCL20P78556 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCL20P78556 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCL20P78556 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCL20P78556 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCL20P78556 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCL20P78556 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC14.89□□□□□ -0.03
CCL20P78556 CASP6-205ENST00000505486 538 ntTSL 4 BASIC14.89□□□□□ -0.03
CCL20P78556 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCL20P78556 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCL20P78556 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCL20P78556 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCL20P78556 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCL20P78556 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CCL20P78556 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCL20P78556 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCL20P78556 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCL20P78556 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC14.89□□□□□ -0.03
CCL20P78556 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC14.89□□□□□ -0.03
CCL20P78556 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC14.89□□□□□ -0.03
CCL20P78556 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
CCL20P78556 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCL20P78556 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC14.89□□□□□ -0.03
CCL20P78556 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCL20P78556 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CCL20P78556 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCL20P78556 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCL20P78556 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
CCL20P78556 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCL20P78556 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCL20P78556 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC14.88□□□□□ -0.03
CCL20P78556 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCL20P78556 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCL20P78556 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CCL20P78556 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC14.88□□□□□ -0.03
CCL20P78556 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC14.88□□□□□ -0.03
CCL20P78556 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCL20P78556 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCL20P78556 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCL20P78556 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCL20P78556 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC14.88□□□□□ -0.03
CCL20P78556 SLC25A6P5-201ENST00000435663 894 ntBASIC14.88□□□□□ -0.03
CCL20P78556 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC14.88□□□□□ -0.03
CCL20P78556 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC14.88□□□□□ -0.03
CCL20P78556 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC14.88□□□□□ -0.03
CCL20P78556 AC027682.1-201ENST00000562846 899 ntBASIC14.88□□□□□ -0.03
CCL20P78556 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC14.88□□□□□ -0.03
CCL20P78556 MAG-206ENST00000597035 542 ntTSL 4 BASIC14.88□□□□□ -0.03
CCL20P78556 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
CCL20P78556 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC14.88□□□□□ -0.03
CCL20P78556 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC14.88□□□□□ -0.03
CCL20P78556 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CCL20P78556 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC14.88□□□□□ -0.03
CCL20P78556 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC14.88□□□□□ -0.03
CCL20P78556 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC14.88□□□□□ -0.03
CCL20P78556 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCL20P78556 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC14.88□□□□□ -0.03
CCL20P78556 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCL20P78556 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC14.88□□□□□ -0.03
CCL20P78556 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
CCL20P78556 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CCL20P78556 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC14.88□□□□□ -0.03
CCL20P78556 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCL20P78556 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC14.88□□□□□ -0.03
CCL20P78556 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC14.88□□□□□ -0.03
CCL20P78556 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC14.88□□□□□ -0.03
CCL20P78556 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCL20P78556 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC14.88□□□□□ -0.03
CCL20P78556 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
CCL20P78556 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCL20P78556 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCL20P78556 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCL20P78556 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCL20P78556 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCL20P78556 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
CCL20P78556 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCL20P78556 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
CCL20P78556 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCL20P78556 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms