Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC21.17■□□□□ 0.98
TPM4P67936 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TPM4P67936 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TPM4P67936 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
TPM4P67936 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
TPM4P67936 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
TPM4P67936 TUBB8P6-201ENST00000436895 1288 ntBASIC21.17■□□□□ 0.98
TPM4P67936 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.17■□□□□ 0.98
TPM4P67936 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC21.17■□□□□ 0.98
TPM4P67936 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.17■□□□□ 0.98
TPM4P67936 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.17■□□□□ 0.98
TPM4P67936 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TPM4P67936 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TPM4P67936 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC21.17■□□□□ 0.98
TPM4P67936 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TPM4P67936 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC21.17■□□□□ 0.98
TPM4P67936 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TPM4P67936 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TPM4P67936 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
TPM4P67936 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TPM4P67936 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC21.17■□□□□ 0.98
TPM4P67936 ABALON-201ENST00000629058 1903 ntBASIC21.17■□□□□ 0.98
TPM4P67936 COBL-210ENST00000632460 1941 ntTSL 5 BASIC21.17■□□□□ 0.98
TPM4P67936 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC21.17■□□□□ 0.98
TPM4P67936 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TPM4P67936 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
TPM4P67936 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TPM4P67936 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
TPM4P67936 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
TPM4P67936 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
TPM4P67936 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
TPM4P67936 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TPM4P67936 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TPM4P67936 MADD-208ENST00000405573 1823 ntTSL 5 BASIC21.16■□□□□ 0.98
TPM4P67936 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC21.16■□□□□ 0.98
TPM4P67936 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TPM4P67936 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC21.16■□□□□ 0.98
TPM4P67936 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.16■□□□□ 0.98
TPM4P67936 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.16■□□□□ 0.98
TPM4P67936 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TPM4P67936 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC21.16■□□□□ 0.98
TPM4P67936 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TPM4P67936 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TPM4P67936 AL133373.2-201ENST00000623187 2828 ntBASIC21.15■□□□□ 0.98
TPM4P67936 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TPM4P67936 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TPM4P67936 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
TPM4P67936 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
TPM4P67936 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
TPM4P67936 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
TPM4P67936 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TPM4P67936 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
TPM4P67936 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TPM4P67936 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC21.15■□□□□ 0.98
TPM4P67936 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TPM4P67936 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC21.15■□□□□ 0.98
TPM4P67936 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TPM4P67936 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TPM4P67936 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TPM4P67936 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TPM4P67936 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
TPM4P67936 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TPM4P67936 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TPM4P67936 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.14■□□□□ 0.98
TPM4P67936 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TPM4P67936 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TPM4P67936 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
TPM4P67936 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.98
TPM4P67936 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
TPM4P67936 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
TPM4P67936 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TPM4P67936 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TPM4P67936 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
TPM4P67936 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TPM4P67936 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
TPM4P67936 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC21.14■□□□□ 0.97
TPM4P67936 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TPM4P67936 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TPM4P67936 KRT18P16-201ENST00000510337 1294 ntBASIC21.14■□□□□ 0.97
TPM4P67936 AF201337.1-201ENST00000520239 748 ntBASIC21.14■□□□□ 0.97
TPM4P67936 AC105036.2-201ENST00000569468 176 ntBASIC21.14■□□□□ 0.97
TPM4P67936 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
TPM4P67936 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
TPM4P67936 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC21.14■□□□□ 0.97
TPM4P67936 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC21.14■□□□□ 0.97
TPM4P67936 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TPM4P67936 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TPM4P67936 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
TPM4P67936 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC21.14■□□□□ 0.97
TPM4P67936 PCDHB18P-201ENST00000524813 2368 ntBASIC21.14■□□□□ 0.97
TPM4P67936 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TPM4P67936 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TPM4P67936 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TPM4P67936 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TPM4P67936 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TPM4P67936 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC21.13■□□□□ 0.97
TPM4P67936 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
TPM4P67936 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC21.13■□□□□ 0.97
TPM4P67936 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TPM4P67936 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms