Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.81■□□□□ 0.92
PEX3P56589 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PEX3P56589 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC20.81■□□□□ 0.92
PEX3P56589 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PEX3P56589 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC20.81■□□□□ 0.92
PEX3P56589 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PEX3P56589 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
PEX3P56589 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PEX3P56589 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
PEX3P56589 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PEX3P56589 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PEX3P56589 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
PEX3P56589 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PEX3P56589 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC20.8■□□□□ 0.92
PEX3P56589 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PEX3P56589 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PEX3P56589 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.8■□□□□ 0.92
PEX3P56589 AC005521.1-201ENST00000393351 872 ntBASIC20.8■□□□□ 0.92
PEX3P56589 AL023284.2-201ENST00000405850 579 ntBASIC20.8■□□□□ 0.92
PEX3P56589 AC113347.1-201ENST00000413321 391 ntBASIC20.8■□□□□ 0.92
PEX3P56589 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.8■□□□□ 0.92
PEX3P56589 AC010203.1-204ENST00000548782 407 ntBASIC20.8■□□□□ 0.92
PEX3P56589 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
PEX3P56589 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PEX3P56589 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PEX3P56589 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
PEX3P56589 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PEX3P56589 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PEX3P56589 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
PEX3P56589 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PEX3P56589 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PEX3P56589 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PEX3P56589 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
PEX3P56589 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.79■□□□□ 0.92
PEX3P56589 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
PEX3P56589 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.79■□□□□ 0.92
PEX3P56589 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.79■□□□□ 0.92
PEX3P56589 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
PEX3P56589 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PEX3P56589 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PEX3P56589 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PEX3P56589 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PEX3P56589 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.79■□□□□ 0.92
PEX3P56589 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
PEX3P56589 RCC2P3-201ENST00000418112 1537 ntBASIC20.78■□□□□ 0.92
PEX3P56589 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
PEX3P56589 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PEX3P56589 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.78■□□□□ 0.92
PEX3P56589 USP39-202ENST00000409025 1946 ntTSL 5 BASIC20.78■□□□□ 0.92
PEX3P56589 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
PEX3P56589 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PEX3P56589 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
PEX3P56589 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PEX3P56589 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PEX3P56589 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
PEX3P56589 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
PEX3P56589 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
PEX3P56589 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.78■□□□□ 0.92
PEX3P56589 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PEX3P56589 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC20.78■□□□□ 0.92
PEX3P56589 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PEX3P56589 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.78■□□□□ 0.92
PEX3P56589 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
PEX3P56589 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
PEX3P56589 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
PEX3P56589 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PEX3P56589 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
PEX3P56589 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PEX3P56589 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.78■□□□□ 0.92
PEX3P56589 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
PEX3P56589 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PEX3P56589 AL137013.1-201ENST00000432946 1228 ntBASIC20.78■□□□□ 0.92
PEX3P56589 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
PEX3P56589 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.78■□□□□ 0.92
PEX3P56589 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PEX3P56589 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PEX3P56589 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
PEX3P56589 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
PEX3P56589 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC20.78■□□□□ 0.92
PEX3P56589 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
PEX3P56589 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PEX3P56589 KRT8P45-201ENST00000414328 1447 ntBASIC20.78■□□□□ 0.92
PEX3P56589 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
PEX3P56589 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PEX3P56589 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PEX3P56589 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
PEX3P56589 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.77■□□□□ 0.92
PEX3P56589 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PEX3P56589 KRT8P32-201ENST00000512863 1461 ntBASIC20.77■□□□□ 0.92
PEX3P56589 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
PEX3P56589 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PEX3P56589 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
PEX3P56589 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.92
PEX3P56589 TERF1P1-201ENST00000311003 1181 ntBASIC20.77■□□□□ 0.92
PEX3P56589 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
PEX3P56589 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC20.77■□□□□ 0.92
PEX3P56589 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.77■□□□□ 0.92
PEX3P56589 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PEX3P56589 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
PEX3P56589 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms