Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH3P22223 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH3P22223 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH3P22223 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.49■□□□□ 0.55
CDH3P22223 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.49■□□□□ 0.55
CDH3P22223 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH3P22223 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.49■□□□□ 0.55
CDH3P22223 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC18.49■□□□□ 0.55
CDH3P22223 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.49■□□□□ 0.55
CDH3P22223 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH3P22223 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.49■□□□□ 0.55
CDH3P22223 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.49■□□□□ 0.55
CDH3P22223 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.49■□□□□ 0.55
CDH3P22223 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
CDH3P22223 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.49■□□□□ 0.55
CDH3P22223 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDH3P22223 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDH3P22223 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.49■□□□□ 0.55
CDH3P22223 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.48■□□□□ 0.55
CDH3P22223 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH3P22223 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH3P22223 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.48■□□□□ 0.55
CDH3P22223 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CDH3P22223 AC104417.2-201ENST00000562989 1793 ntBASIC18.48■□□□□ 0.55
CDH3P22223 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.48■□□□□ 0.55
CDH3P22223 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH3P22223 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CDH3P22223 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH3P22223 AC096733.2-201ENST00000609937 1394 ntBASIC18.48■□□□□ 0.55
CDH3P22223 KRT18P21-201ENST00000515767 1272 ntBASIC18.48■□□□□ 0.55
CDH3P22223 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CDH3P22223 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.48■□□□□ 0.55
CDH3P22223 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC18.48■□□□□ 0.55
CDH3P22223 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.48■□□□□ 0.55
CDH3P22223 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CDH3P22223 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.48■□□□□ 0.55
CDH3P22223 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CDH3P22223 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CDH3P22223 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.48■□□□□ 0.55
CDH3P22223 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.48■□□□□ 0.55
CDH3P22223 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH3P22223 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.48■□□□□ 0.55
CDH3P22223 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
CDH3P22223 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH3P22223 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDH3P22223 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH3P22223 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDH3P22223 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDH3P22223 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDH3P22223 FZD10-202ENST00000539839 3282 ntBASIC18.47■□□□□ 0.55
CDH3P22223 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDH3P22223 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.47■□□□□ 0.55
CDH3P22223 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
CDH3P22223 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDH3P22223 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH3P22223 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH3P22223 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CDH3P22223 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.47■□□□□ 0.55
CDH3P22223 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDH3P22223 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.47■□□□□ 0.55
CDH3P22223 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH3P22223 AC005363.2-201ENST00000618631 242 ntBASIC18.47■□□□□ 0.55
CDH3P22223 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.47■□□□□ 0.55
CDH3P22223 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH3P22223 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.47■□□□□ 0.55
CDH3P22223 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.47■□□□□ 0.55
CDH3P22223 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.47■□□□□ 0.55
CDH3P22223 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
CDH3P22223 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.47■□□□□ 0.55
CDH3P22223 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH3P22223 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CDH3P22223 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.47■□□□□ 0.55
CDH3P22223 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.47■□□□□ 0.55
CDH3P22223 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH3P22223 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH3P22223 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.47■□□□□ 0.55
CDH3P22223 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.47■□□□□ 0.55
CDH3P22223 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CDH3P22223 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH3P22223 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH3P22223 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH3P22223 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CDH3P22223 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH3P22223 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.46■□□□□ 0.55
CDH3P22223 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CDH3P22223 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CDH3P22223 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH3P22223 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH3P22223 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CDH3P22223 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CDH3P22223 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.46■□□□□ 0.55
CDH3P22223 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.46■□□□□ 0.55
CDH3P22223 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC18.46■□□□□ 0.55
CDH3P22223 AC128688.1-201ENST00000487626 519 ntBASIC18.46■□□□□ 0.55
CDH3P22223 EGLN1P1-201ENST00000531623 762 ntBASIC18.46■□□□□ 0.55
CDH3P22223 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CDH3P22223 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.46■□□□□ 0.55
CDH3P22223 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
CDH3P22223 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
CDH3P22223 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms