Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
XRCC1P18887 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
XRCC1P18887 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.85■□□□□ 0.61
XRCC1P18887 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
XRCC1P18887 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.84■□□□□ 0.61
XRCC1P18887 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.84■□□□□ 0.61
XRCC1P18887 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
XRCC1P18887 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
XRCC1P18887 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
XRCC1P18887 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.84■□□□□ 0.61
XRCC1P18887 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
XRCC1P18887 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
XRCC1P18887 AP000692.2-201ENST00000608391 879 ntBASIC18.84■□□□□ 0.61
XRCC1P18887 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.84■□□□□ 0.61
XRCC1P18887 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.84■□□□□ 0.61
XRCC1P18887 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
XRCC1P18887 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
XRCC1P18887 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
XRCC1P18887 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
XRCC1P18887 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
XRCC1P18887 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
XRCC1P18887 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
XRCC1P18887 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.83■□□□□ 0.61
XRCC1P18887 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.83■□□□□ 0.61
XRCC1P18887 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
XRCC1P18887 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
XRCC1P18887 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
XRCC1P18887 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
XRCC1P18887 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
XRCC1P18887 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
XRCC1P18887 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
XRCC1P18887 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
XRCC1P18887 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.83■□□□□ 0.6
XRCC1P18887 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.83■□□□□ 0.6
XRCC1P18887 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.83■□□□□ 0.6
XRCC1P18887 AP005242.2-201ENST00000580065 1175 ntBASIC18.83■□□□□ 0.6
XRCC1P18887 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.83■□□□□ 0.6
XRCC1P18887 AC011298.2-201ENST00000617989 482 ntBASIC18.83■□□□□ 0.6
XRCC1P18887 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.83■□□□□ 0.6
XRCC1P18887 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
XRCC1P18887 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
XRCC1P18887 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
XRCC1P18887 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.83■□□□□ 0.6
XRCC1P18887 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.83■□□□□ 0.6
XRCC1P18887 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.83■□□□□ 0.6
XRCC1P18887 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.83■□□□□ 0.6
XRCC1P18887 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
XRCC1P18887 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.83■□□□□ 0.6
XRCC1P18887 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
XRCC1P18887 KRT8P9-201ENST00000558927 1449 ntBASIC18.83■□□□□ 0.6
XRCC1P18887 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.82■□□□□ 0.6
XRCC1P18887 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
XRCC1P18887 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
XRCC1P18887 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
XRCC1P18887 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.82■□□□□ 0.6
XRCC1P18887 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.82■□□□□ 0.6
XRCC1P18887 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
XRCC1P18887 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.82■□□□□ 0.6
XRCC1P18887 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
XRCC1P18887 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
XRCC1P18887 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.82■□□□□ 0.6
XRCC1P18887 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
XRCC1P18887 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.82■□□□□ 0.6
XRCC1P18887 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
XRCC1P18887 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
XRCC1P18887 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
XRCC1P18887 AL390955.1-201ENST00000428694 934 ntBASIC18.82■□□□□ 0.6
XRCC1P18887 AC097488.1-201ENST00000507834 756 ntBASIC18.82■□□□□ 0.6
XRCC1P18887 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
XRCC1P18887 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.82■□□□□ 0.6
XRCC1P18887 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
XRCC1P18887 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.82■□□□□ 0.6
XRCC1P18887 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.82■□□□□ 0.6
XRCC1P18887 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.82■□□□□ 0.6
XRCC1P18887 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
XRCC1P18887 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
XRCC1P18887 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
XRCC1P18887 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
XRCC1P18887 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
XRCC1P18887 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
XRCC1P18887 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.82■□□□□ 0.6
XRCC1P18887 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
XRCC1P18887 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
XRCC1P18887 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.82■□□□□ 0.6
XRCC1P18887 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
XRCC1P18887 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.81■□□□□ 0.6
XRCC1P18887 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC1P18887 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC1P18887 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC1P18887 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC1P18887 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
XRCC1P18887 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC1P18887 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC1P18887 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC1P18887 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
XRCC1P18887 AC009113.1-201ENST00000570267 2443 ntBASIC18.81■□□□□ 0.6
XRCC1P18887 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC1P18887 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC1P18887 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC1P18887 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms