Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.21■□□□□ 0.51
SLC28A1O00337 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.21■□□□□ 0.51
SLC28A1O00337 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SLC28A1O00337 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SLC28A1O00337 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.21■□□□□ 0.51
SLC28A1O00337 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.21■□□□□ 0.51
SLC28A1O00337 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SLC28A1O00337 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
SLC28A1O00337 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SLC28A1O00337 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SLC28A1O00337 AC135050.7-201ENST00000624508 2218 ntBASIC18.21■□□□□ 0.5
SLC28A1O00337 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC28A1O00337 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.2■□□□□ 0.5
SLC28A1O00337 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.2■□□□□ 0.5
SLC28A1O00337 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.2■□□□□ 0.5
SLC28A1O00337 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC28A1O00337 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC28A1O00337 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SLC28A1O00337 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
SLC28A1O00337 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC28A1O00337 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SLC28A1O00337 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC28A1O00337 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC28A1O00337 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC28A1O00337 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC28A1O00337 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
SLC28A1O00337 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.2■□□□□ 0.5
SLC28A1O00337 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC28A1O00337 AL445675.2-201ENST00000620291 557 ntBASIC18.2■□□□□ 0.5
SLC28A1O00337 AC131212.4-201ENST00000623606 975 ntBASIC18.2■□□□□ 0.5
SLC28A1O00337 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC28A1O00337 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
SLC28A1O00337 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SLC28A1O00337 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC28A1O00337 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.2■□□□□ 0.5
SLC28A1O00337 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SLC28A1O00337 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SLC28A1O00337 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC28A1O00337 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.19■□□□□ 0.5
SLC28A1O00337 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.19■□□□□ 0.5
SLC28A1O00337 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC28A1O00337 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC28A1O00337 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC28A1O00337 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC28A1O00337 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.19■□□□□ 0.5
SLC28A1O00337 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC28A1O00337 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.19■□□□□ 0.5
SLC28A1O00337 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
SLC28A1O00337 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC28A1O00337 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SLC28A1O00337 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC28A1O00337 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SLC28A1O00337 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.19■□□□□ 0.5
SLC28A1O00337 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SLC28A1O00337 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC28A1O00337 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC28A1O00337 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
SLC28A1O00337 POU5F1P3-201ENST00000428824 1078 ntBASIC18.19■□□□□ 0.5
SLC28A1O00337 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.19■□□□□ 0.5
SLC28A1O00337 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.19■□□□□ 0.5
SLC28A1O00337 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC28A1O00337 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.19■□□□□ 0.5
SLC28A1O00337 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.19■□□□□ 0.5
SLC28A1O00337 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.19■□□□□ 0.5
SLC28A1O00337 AC110285.5-201ENST00000611501 352 ntBASIC18.19■□□□□ 0.5
SLC28A1O00337 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
SLC28A1O00337 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC28A1O00337 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.19■□□□□ 0.5
SLC28A1O00337 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC28A1O00337 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC28A1O00337 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.19■□□□□ 0.5
SLC28A1O00337 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC28A1O00337 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC28A1O00337 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
SLC28A1O00337 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SLC28A1O00337 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
SLC28A1O00337 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC28A1O00337 RCC2P6-201ENST00000526625 1557 ntBASIC18.18■□□□□ 0.5
SLC28A1O00337 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC28A1O00337 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.18■□□□□ 0.5
SLC28A1O00337 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC28A1O00337 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SLC28A1O00337 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC28A1O00337 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SLC28A1O00337 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC28A1O00337 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC28A1O00337 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.18■□□□□ 0.5
SLC28A1O00337 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
SLC28A1O00337 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SLC28A1O00337 AC133681.1-201ENST00000465482 601 ntBASIC18.18■□□□□ 0.5
SLC28A1O00337 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC28A1O00337 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.18■□□□□ 0.5
SLC28A1O00337 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.18■□□□□ 0.5
SLC28A1O00337 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.18■□□□□ 0.5
SLC28A1O00337 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.18■□□□□ 0.5
SLC28A1O00337 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.18■□□□□ 0.5
SLC28A1O00337 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.18■□□□□ 0.5
SLC28A1O00337 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.18■□□□□ 0.5
SLC28A1O00337 AC124016.1-201ENST00000609552 612 ntBASIC18.18■□□□□ 0.5
SLC28A1O00337 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms