Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMIM28A0A1B0GU29 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMIM28A0A1B0GU29 AC005332.7-201ENST00000614046 2005 ntBASIC20.27■□□□□ 0.84
SMIM28A0A1B0GU29 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMIM28A0A1B0GU29 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMIM28A0A1B0GU29 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMIM28A0A1B0GU29 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SMIM28A0A1B0GU29 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMIM28A0A1B0GU29 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
SMIM28A0A1B0GU29 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.27■□□□□ 0.84
SMIM28A0A1B0GU29 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SMIM28A0A1B0GU29 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMIM28A0A1B0GU29 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMIM28A0A1B0GU29 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.27■□□□□ 0.84
SMIM28A0A1B0GU29 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMIM28A0A1B0GU29 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SMIM28A0A1B0GU29 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.27■□□□□ 0.84
SMIM28A0A1B0GU29 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SMIM28A0A1B0GU29 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.27■□□□□ 0.84
SMIM28A0A1B0GU29 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMIM28A0A1B0GU29 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.83
SMIM28A0A1B0GU29 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
SMIM28A0A1B0GU29 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.83
SMIM28A0A1B0GU29 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.83
SMIM28A0A1B0GU29 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.26■□□□□ 0.83
SMIM28A0A1B0GU29 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC20.26■□□□□ 0.83
SMIM28A0A1B0GU29 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SMIM28A0A1B0GU29 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMIM28A0A1B0GU29 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.26■□□□□ 0.83
SMIM28A0A1B0GU29 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SMIM28A0A1B0GU29 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SMIM28A0A1B0GU29 STARP1-201ENST00000397973 869 ntBASIC20.26■□□□□ 0.83
SMIM28A0A1B0GU29 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.26■□□□□ 0.83
SMIM28A0A1B0GU29 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC20.26■□□□□ 0.83
SMIM28A0A1B0GU29 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC20.26■□□□□ 0.83
SMIM28A0A1B0GU29 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMIM28A0A1B0GU29 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SMIM28A0A1B0GU29 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMIM28A0A1B0GU29 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SMIM28A0A1B0GU29 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SMIM28A0A1B0GU29 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.26■□□□□ 0.83
SMIM28A0A1B0GU29 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC20.26■□□□□ 0.83
SMIM28A0A1B0GU29 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC20.26■□□□□ 0.83
SMIM28A0A1B0GU29 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.25■□□□□ 0.83
SMIM28A0A1B0GU29 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SMIM28A0A1B0GU29 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMIM28A0A1B0GU29 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SMIM28A0A1B0GU29 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC20.25■□□□□ 0.83
SMIM28A0A1B0GU29 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SMIM28A0A1B0GU29 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMIM28A0A1B0GU29 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SMIM28A0A1B0GU29 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SMIM28A0A1B0GU29 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
SMIM28A0A1B0GU29 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC20.25■□□□□ 0.83
SMIM28A0A1B0GU29 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC20.25■□□□□ 0.83
SMIM28A0A1B0GU29 AC024243.1-201ENST00000609234 778 ntBASIC20.25■□□□□ 0.83
SMIM28A0A1B0GU29 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC20.25■□□□□ 0.83
SMIM28A0A1B0GU29 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SMIM28A0A1B0GU29 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SMIM28A0A1B0GU29 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SMIM28A0A1B0GU29 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 AC116562.4-201ENST00000641316 2276 ntBASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 AL671277.2-201ENST00000458060 996 ntBASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 DFFB-212ENST00000625756 649 ntTSL 5 BASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SMIM28A0A1B0GU29 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SMIM28A0A1B0GU29 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.23■□□□□ 0.83
SMIM28A0A1B0GU29 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMIM28A0A1B0GU29 ENSA-205ENST00000361532 792 ntTSL 2 BASIC20.23■□□□□ 0.83
SMIM28A0A1B0GU29 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
SMIM28A0A1B0GU29 SPDYE15P-201ENST00000424157 909 ntBASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms