Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 AC010653.2-201ENST00000623505 997 ntBASIC21.75■■□□□ 1.07
DDX41Q9UJV9 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
DDX41Q9UJV9 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC21.75■■□□□ 1.07
DDX41Q9UJV9 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
DDX41Q9UJV9 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
DDX41Q9UJV9 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
DDX41Q9UJV9 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC21.75■■□□□ 1.07
DDX41Q9UJV9 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC21.75■■□□□ 1.07
DDX41Q9UJV9 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
DDX41Q9UJV9 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
DDX41Q9UJV9 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
DDX41Q9UJV9 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
DDX41Q9UJV9 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
DDX41Q9UJV9 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
DDX41Q9UJV9 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC21.74■■□□□ 1.07
DDX41Q9UJV9 BX664615.1-201ENST00000443558 458 ntBASIC21.74■■□□□ 1.07
DDX41Q9UJV9 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC21.74■■□□□ 1.07
DDX41Q9UJV9 AL138966.2-201ENST00000621997 464 ntBASIC21.74■■□□□ 1.07
DDX41Q9UJV9 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
DDX41Q9UJV9 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
DDX41Q9UJV9 AR-207ENST00000612010 3896 ntTSL 5 BASIC21.74■■□□□ 1.07
DDX41Q9UJV9 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
DDX41Q9UJV9 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
DDX41Q9UJV9 TCF3P1-201ENST00000423021 1937 ntBASIC21.74■■□□□ 1.07
DDX41Q9UJV9 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
DDX41Q9UJV9 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
DDX41Q9UJV9 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
DDX41Q9UJV9 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
DDX41Q9UJV9 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
DDX41Q9UJV9 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 TPM1-226ENST00000560959 925 ntTSL 2 BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 CKBP1-201ENST00000565489 1086 ntBASIC21.73■■□□□ 1.07
DDX41Q9UJV9 RMI2-205ENST00000576027 818 ntTSL 2 BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 NTF6B-201ENST00000591913 560 ntBASIC21.73■■□□□ 1.07
DDX41Q9UJV9 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 AC005332.7-201ENST00000614046 2005 ntBASIC21.73■■□□□ 1.07
DDX41Q9UJV9 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 LTB4R2-202ENST00000528054 3092 ntBASIC21.73■■□□□ 1.07
DDX41Q9UJV9 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
DDX41Q9UJV9 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
DDX41Q9UJV9 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC21.72■■□□□ 1.07
DDX41Q9UJV9 ANKRD18DP-204ENST00000455355 1975 ntBASIC21.72■■□□□ 1.07
DDX41Q9UJV9 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
DDX41Q9UJV9 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
DDX41Q9UJV9 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC21.72■■□□□ 1.07
DDX41Q9UJV9 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC21.72■■□□□ 1.07
DDX41Q9UJV9 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
DDX41Q9UJV9 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
DDX41Q9UJV9 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
DDX41Q9UJV9 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC21.72■■□□□ 1.07
DDX41Q9UJV9 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
DDX41Q9UJV9 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC21.72■■□□□ 1.07
DDX41Q9UJV9 TSPY17P-201ENST00000450329 467 ntBASIC21.72■■□□□ 1.07
DDX41Q9UJV9 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC21.72■■□□□ 1.07
DDX41Q9UJV9 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
DDX41Q9UJV9 LTBR-211ENST00000543190 785 ntTSL 3 BASIC21.72■■□□□ 1.07
DDX41Q9UJV9 AL353719.1-201ENST00000566847 864 ntBASIC21.72■■□□□ 1.07
DDX41Q9UJV9 WWOX-216ENST00000569818 525 ntBASIC21.72■■□□□ 1.07
DDX41Q9UJV9 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC21.72■■□□□ 1.07
DDX41Q9UJV9 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.72■■□□□ 1.07
DDX41Q9UJV9 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
DDX41Q9UJV9 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
DDX41Q9UJV9 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
DDX41Q9UJV9 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
DDX41Q9UJV9 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
DDX41Q9UJV9 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
DDX41Q9UJV9 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
DDX41Q9UJV9 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
DDX41Q9UJV9 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
DDX41Q9UJV9 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
DDX41Q9UJV9 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
DDX41Q9UJV9 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC21.71■■□□□ 1.07
DDX41Q9UJV9 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC21.71■■□□□ 1.07
DDX41Q9UJV9 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
DDX41Q9UJV9 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
DDX41Q9UJV9 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms