Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLN6Q9NWW5 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLN6Q9NWW5 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CLN6Q9NWW5 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLN6Q9NWW5 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLN6Q9NWW5 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
CLN6Q9NWW5 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.29■□□□□ 0.36
CLN6Q9NWW5 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLN6Q9NWW5 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.29■□□□□ 0.36
CLN6Q9NWW5 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLN6Q9NWW5 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLN6Q9NWW5 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLN6Q9NWW5 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 ME3-201ENST00000323418 1068 ntTSL 5 BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 AC093787.1-201ENST00000450396 207 ntBASIC17.28■□□□□ 0.36
CLN6Q9NWW5 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 ISCU-212ENST00000547005 795 ntTSL 3 BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 KRT8P8-201ENST00000434750 1448 ntBASIC17.28■□□□□ 0.36
CLN6Q9NWW5 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
CLN6Q9NWW5 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLN6Q9NWW5 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.27■□□□□ 0.36
CLN6Q9NWW5 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.27■□□□□ 0.36
CLN6Q9NWW5 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLN6Q9NWW5 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLN6Q9NWW5 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLN6Q9NWW5 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
CLN6Q9NWW5 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CLN6Q9NWW5 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLN6Q9NWW5 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLN6Q9NWW5 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLN6Q9NWW5 GPX1P1-201ENST00000388829 606 ntBASIC17.27■□□□□ 0.36
CLN6Q9NWW5 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC17.27■□□□□ 0.36
CLN6Q9NWW5 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLN6Q9NWW5 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC17.27■□□□□ 0.36
CLN6Q9NWW5 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC17.27■□□□□ 0.36
CLN6Q9NWW5 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLN6Q9NWW5 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLN6Q9NWW5 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLN6Q9NWW5 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLN6Q9NWW5 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
CLN6Q9NWW5 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLN6Q9NWW5 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLN6Q9NWW5 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
CLN6Q9NWW5 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.35
CLN6Q9NWW5 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLN6Q9NWW5 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLN6Q9NWW5 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLN6Q9NWW5 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLN6Q9NWW5 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.26■□□□□ 0.35
CLN6Q9NWW5 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLN6Q9NWW5 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
CLN6Q9NWW5 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLN6Q9NWW5 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CLN6Q9NWW5 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.26■□□□□ 0.35
CLN6Q9NWW5 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC17.26■□□□□ 0.35
CLN6Q9NWW5 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.26■□□□□ 0.35
CLN6Q9NWW5 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.26■□□□□ 0.35
CLN6Q9NWW5 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC17.26■□□□□ 0.35
CLN6Q9NWW5 LSM12P1-201ENST00000411836 588 ntBASIC17.26■□□□□ 0.35
CLN6Q9NWW5 AL390719.1-204ENST00000412397 1219 ntBASIC17.26■□□□□ 0.35
CLN6Q9NWW5 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC17.26■□□□□ 0.35
CLN6Q9NWW5 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC17.26■□□□□ 0.35
CLN6Q9NWW5 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC17.26■□□□□ 0.35
CLN6Q9NWW5 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLN6Q9NWW5 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC17.26■□□□□ 0.35
CLN6Q9NWW5 MAZ-216ENST00000616501 991 ntTSL 5 BASIC17.26■□□□□ 0.35
CLN6Q9NWW5 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC17.26■□□□□ 0.35
CLN6Q9NWW5 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLN6Q9NWW5 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC17.26■□□□□ 0.35
CLN6Q9NWW5 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CLN6Q9NWW5 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLN6Q9NWW5 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms