Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
CISHQ9NSE2 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CISHQ9NSE2 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CISHQ9NSE2 AL512353.2-201ENST00000448759 1962 ntBASIC20.18■□□□□ 0.82
CISHQ9NSE2 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.18■□□□□ 0.82
CISHQ9NSE2 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.18■□□□□ 0.82
CISHQ9NSE2 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.18■□□□□ 0.82
CISHQ9NSE2 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.18■□□□□ 0.82
CISHQ9NSE2 C2orf69P3-201ENST00000565542 1120 ntBASIC20.18■□□□□ 0.82
CISHQ9NSE2 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC20.18■□□□□ 0.82
CISHQ9NSE2 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.18■□□□□ 0.82
CISHQ9NSE2 AL023803.3-201ENST00000615559 522 ntBASIC20.18■□□□□ 0.82
CISHQ9NSE2 AC008622.2-201ENST00000617006 1229 ntBASIC20.18■□□□□ 0.82
CISHQ9NSE2 AC010947.1-201ENST00000623454 693 ntBASIC20.18■□□□□ 0.82
CISHQ9NSE2 TNXA-203ENST00000507684 2038 ntBASIC20.18■□□□□ 0.82
CISHQ9NSE2 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CISHQ9NSE2 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.18■□□□□ 0.82
CISHQ9NSE2 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CISHQ9NSE2 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CISHQ9NSE2 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CISHQ9NSE2 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.18■□□□□ 0.82
CISHQ9NSE2 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CISHQ9NSE2 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
CISHQ9NSE2 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CISHQ9NSE2 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CISHQ9NSE2 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CISHQ9NSE2 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CISHQ9NSE2 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
CISHQ9NSE2 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CISHQ9NSE2 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CISHQ9NSE2 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CISHQ9NSE2 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CISHQ9NSE2 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CISHQ9NSE2 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CISHQ9NSE2 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.17■□□□□ 0.82
CISHQ9NSE2 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.17■□□□□ 0.82
CISHQ9NSE2 AC083906.6-201ENST00000641366 219 ntBASIC20.17■□□□□ 0.82
CISHQ9NSE2 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
CISHQ9NSE2 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CISHQ9NSE2 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CISHQ9NSE2 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CISHQ9NSE2 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CISHQ9NSE2 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
CISHQ9NSE2 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CISHQ9NSE2 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CISHQ9NSE2 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.16■□□□□ 0.82
CISHQ9NSE2 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC20.16■□□□□ 0.82
CISHQ9NSE2 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CISHQ9NSE2 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CISHQ9NSE2 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CISHQ9NSE2 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CISHQ9NSE2 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CISHQ9NSE2 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CISHQ9NSE2 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.16■□□□□ 0.82
CISHQ9NSE2 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CISHQ9NSE2 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CISHQ9NSE2 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.16■□□□□ 0.82
CISHQ9NSE2 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CISHQ9NSE2 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CISHQ9NSE2 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CISHQ9NSE2 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CISHQ9NSE2 NAPSB-206ENST00000562112 1266 ntBASIC20.16■□□□□ 0.82
CISHQ9NSE2 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.16■□□□□ 0.82
CISHQ9NSE2 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
CISHQ9NSE2 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CISHQ9NSE2 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CISHQ9NSE2 KRT8P32-201ENST00000512863 1461 ntBASIC20.16■□□□□ 0.82
CISHQ9NSE2 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CISHQ9NSE2 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CISHQ9NSE2 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
CISHQ9NSE2 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CISHQ9NSE2 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CISHQ9NSE2 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.15■□□□□ 0.82
CISHQ9NSE2 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC20.15■□□□□ 0.82
CISHQ9NSE2 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CISHQ9NSE2 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CISHQ9NSE2 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CISHQ9NSE2 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CISHQ9NSE2 TSPY14P-201ENST00000303979 915 ntBASIC20.15■□□□□ 0.82
CISHQ9NSE2 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.15■□□□□ 0.82
CISHQ9NSE2 AC087499.1-201ENST00000418141 1075 ntBASIC20.15■□□□□ 0.82
CISHQ9NSE2 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.15■□□□□ 0.82
CISHQ9NSE2 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.15■□□□□ 0.82
CISHQ9NSE2 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.15■□□□□ 0.82
CISHQ9NSE2 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.15■□□□□ 0.82
CISHQ9NSE2 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.15■□□□□ 0.82
CISHQ9NSE2 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CISHQ9NSE2 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CISHQ9NSE2 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.15■□□□□ 0.82
CISHQ9NSE2 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CISHQ9NSE2 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.15■□□□□ 0.82
CISHQ9NSE2 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
CISHQ9NSE2 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CISHQ9NSE2 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.14■□□□□ 0.82
CISHQ9NSE2 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
CISHQ9NSE2 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC20.14■□□□□ 0.81
CISHQ9NSE2 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CISHQ9NSE2 AC092338.2-201ENST00000568827 1415 ntBASIC20.14■□□□□ 0.81
CISHQ9NSE2 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CISHQ9NSE2 INGX-201ENST00000359239 846 ntBASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms