Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 IPPK-202ENST00000375522 882 ntTSL 3 BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC22.35■■□□□ 1.17
DDX4Q9NQI0 AC012313.10-201ENST00000623509 926 ntBASIC22.35■■□□□ 1.17
DDX4Q9NQI0 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 AL109659.2-201ENST00000606809 1674 ntBASIC22.35■■□□□ 1.17
DDX4Q9NQI0 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
DDX4Q9NQI0 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
DDX4Q9NQI0 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
DDX4Q9NQI0 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
DDX4Q9NQI0 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
DDX4Q9NQI0 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
DDX4Q9NQI0 AFG3L1P-217ENST00000557444 2447 ntBASIC22.34■■□□□ 1.17
DDX4Q9NQI0 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
DDX4Q9NQI0 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
DDX4Q9NQI0 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
DDX4Q9NQI0 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
DDX4Q9NQI0 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
DDX4Q9NQI0 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC22.34■■□□□ 1.17
DDX4Q9NQI0 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC22.34■■□□□ 1.17
DDX4Q9NQI0 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC22.34■■□□□ 1.17
DDX4Q9NQI0 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC22.34■■□□□ 1.17
DDX4Q9NQI0 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC22.34■■□□□ 1.17
DDX4Q9NQI0 BCL10-202ENST00000620248 774 ntTSL 5 BASIC22.34■■□□□ 1.17
DDX4Q9NQI0 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC22.34■■□□□ 1.17
DDX4Q9NQI0 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
DDX4Q9NQI0 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
DDX4Q9NQI0 FEM1AP3-201ENST00000403722 1741 ntBASIC22.34■■□□□ 1.17
DDX4Q9NQI0 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
DDX4Q9NQI0 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC22.33■■□□□ 1.17
DDX4Q9NQI0 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
DDX4Q9NQI0 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
DDX4Q9NQI0 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC22.33■■□□□ 1.17
DDX4Q9NQI0 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC22.33■■□□□ 1.17
DDX4Q9NQI0 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
DDX4Q9NQI0 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC22.33■■□□□ 1.17
DDX4Q9NQI0 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC22.33■■□□□ 1.17
DDX4Q9NQI0 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
DDX4Q9NQI0 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
DDX4Q9NQI0 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
DDX4Q9NQI0 KATNBL1P6-202ENST00000562413 1466 ntBASIC22.33■■□□□ 1.16
DDX4Q9NQI0 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
DDX4Q9NQI0 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.16
DDX4Q9NQI0 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC22.33■■□□□ 1.16
DDX4Q9NQI0 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC22.33■■□□□ 1.16
DDX4Q9NQI0 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
DDX4Q9NQI0 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
DDX4Q9NQI0 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
DDX4Q9NQI0 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
DDX4Q9NQI0 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
DDX4Q9NQI0 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
DDX4Q9NQI0 UBQLN4P1-201ENST00000461599 1801 ntBASIC22.32■■□□□ 1.16
DDX4Q9NQI0 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
DDX4Q9NQI0 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC22.32■■□□□ 1.16
DDX4Q9NQI0 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
DDX4Q9NQI0 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
DDX4Q9NQI0 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
DDX4Q9NQI0 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
DDX4Q9NQI0 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
DDX4Q9NQI0 HLA-F-220ENST00000434407 884 ntBASIC22.32■■□□□ 1.16
DDX4Q9NQI0 GRAMD4P1-201ENST00000435181 1110 ntBASIC22.32■■□□□ 1.16
DDX4Q9NQI0 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
DDX4Q9NQI0 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
DDX4Q9NQI0 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
DDX4Q9NQI0 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
DDX4Q9NQI0 MIR3917-201ENST00000580971 93 ntBASIC22.32■■□□□ 1.16
DDX4Q9NQI0 AC092119.3-201ENST00000612618 583 ntBASIC22.32■■□□□ 1.16
DDX4Q9NQI0 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC22.32■■□□□ 1.16
DDX4Q9NQI0 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC22.32■■□□□ 1.16
DDX4Q9NQI0 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
DDX4Q9NQI0 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC22.32■■□□□ 1.16
DDX4Q9NQI0 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
DDX4Q9NQI0 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC22.32■■□□□ 1.16
DDX4Q9NQI0 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
DDX4Q9NQI0 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
DDX4Q9NQI0 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
DDX4Q9NQI0 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC22.31■■□□□ 1.16
DDX4Q9NQI0 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
DDX4Q9NQI0 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms