Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 TEX21P-204ENST00000641479 1693 ntBASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 AC141586.3-201ENST00000562166 1838 ntBASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 AC006557.6-201ENST00000623071 864 ntBASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHMP1AQ9HD42 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
CHMP1AQ9HD42 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.27■□□□□ 0.2
CHMP1AQ9HD42 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CHMP1AQ9HD42 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CHMP1AQ9HD42 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
CHMP1AQ9HD42 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC16.27■□□□□ 0.2
CHMP1AQ9HD42 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CHMP1AQ9HD42 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CHMP1AQ9HD42 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
CHMP1AQ9HD42 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CHMP1AQ9HD42 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CHMP1AQ9HD42 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
CHMP1AQ9HD42 AC026185.1-201ENST00000445748 174 ntBASIC16.27■□□□□ 0.2
CHMP1AQ9HD42 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC16.27■□□□□ 0.2
CHMP1AQ9HD42 HES2-206ENST00000489730 730 ntTSL 2 BASIC16.27■□□□□ 0.2
CHMP1AQ9HD42 RAP2CP1-201ENST00000605103 478 ntBASIC16.27■□□□□ 0.2
CHMP1AQ9HD42 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
CHMP1AQ9HD42 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
CHMP1AQ9HD42 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CHMP1AQ9HD42 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
CHMP1AQ9HD42 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CHMP1AQ9HD42 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
CHMP1AQ9HD42 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CHMP1AQ9HD42 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
CHMP1AQ9HD42 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CHMP1AQ9HD42 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CHMP1AQ9HD42 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
CHMP1AQ9HD42 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CHMP1AQ9HD42 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
CHMP1AQ9HD42 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.27■□□□□ 0.19
CHMP1AQ9HD42 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
CHMP1AQ9HD42 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
CHMP1AQ9HD42 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CHMP1AQ9HD42 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 OR6D1P-203ENST00000641209 4860 ntBASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 DUSP5P2-201ENST00000426873 1033 ntBASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 PARL-206ENST00000435888 1098 ntTSL 5 BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 AL050303.2-201ENST00000619798 666 ntBASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
CHMP1AQ9HD42 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms